Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1020 a.a., exonuclease SbcC, putative (RefSeq) from Shewanella amazonensis SB2B

 Score =  591 bits (1523), Expect = e-172
 Identities = 387/1028 (37%), Positives = 554/1028 (53%), Gaps = 28/1028 (2%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTKLGDAPLFLINGATGAGKSSILDAICYALYGETTGSE 60
            M+PL L + AFGPF   + +DF  LG+ PLFLING TGAGK++ILDAIC+ALYG+TTG+E
Sbjct: 1    MKPLTLAITAFGPFVDTQTLDFRALGEWPLFLINGPTGAGKTTILDAICFALYGKTTGNE 60

Query: 61   RTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL 120
            R G QMRCD A  + LTEV FEF L    Y++ R P+Q+  KK GEG T +   A L  +
Sbjct: 61   REGTQMRCDAAPDDVLTEVTFEFGLGDKVYRVKRMPEQQRAKKSGEGFTVQKSDALLERI 120

Query: 121  KSDGNE-LIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQL 179
            + +    L A K   V   + +L+GL+V+QFRQVMVLPQG+FR+LL A+SKERE IFGQL
Sbjct: 121  EGEHTTPLAAGKVTEVTAQIEDLLGLEVEQFRQVMVLPQGQFRKLLLADSKEREAIFGQL 180

Query: 180  FQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTHA 239
            FQT +Y +IE +L ++A  ++   +E + +  G L   G ES E L   ++ LAP L  A
Sbjct: 181  FQTGIYKRIEDSLKQKALELKARAKELEARRAGILETAGAESVEALNDAISALAPELASA 240

Query: 240  QSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQATHIEMLRQQRQQAQK 299
                +A + +    KA  +AA    ++F       + +     +A  +  L  Q ++A  
Sbjct: 241  TKAKQAAEAKLTAAKAQREAAEAKLREFSALNDTRLRLEAENAKAESMAALGMQLERAAL 300

Query: 300  AARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVPKLN 359
            A  L    Q W +  K  + A       +     A    +QA+ +   A  A   +P+L 
Sbjct: 301  AESLAGTWQAWEERAKERKSA-------EAAAVMAAEAAKQAELSYANAKTAAAALPELE 353

Query: 360  EQRITWQRAEQKLLA-QENVQQAVAKAERELQLA-TQNAL--NLQQASEKLEQELQNQRL 415
             +R   +   ++L   +  + +  A  E    L  T NAL  NL     +L  + Q +  
Sbjct: 354  ARRHQLKNEAERLAEWRPRMHRLSALNEAITGLGQTLNALDANLAHVRSRLG-DTQGRIA 412

Query: 416  EWEQQQRQLTRLEVQKARMNQ-LVQQVQAREREQSLLNELQTAQQA---LLRFEQQHHHI 471
               QQ+R L+ L      +   LVQQ    ER Q L+ + + AQ+    L R E      
Sbjct: 413  MLTQQRRDLSALASTAGSLEATLVQQTHVFERHQQLIEKERQAQKLATELSRLEADGRQA 472

Query: 472  QTQAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQYSGDVVTKVQV 531
            +   +      + LE AWH  +AA LA  L    PCPVCGS+EHP+ A + G +    ++
Sbjct: 473  KANQDNLTRARELLELAWHQGQAAMLAARLLPGAPCPVCGSVEHPSPAHHEGALPGDDEL 532

Query: 532  EQARQQQQDWVQRQQEAFHAWQQQGFKTEQIAQNLTT--------LSSELTLQQVALLNE 583
              AR+ +Q   +    A   ++ Q  + E + Q L          L++ L  +Q AL  +
Sbjct: 533  AAAREAEQQAREMLSRARSEYKAQKQRLEVMQQELANDAAALGDALATSLEQKQYAL-GQ 591

Query: 584  LIEQQQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQA 643
              E  Q   +   +LQ L  +L   Q++  +++L      L++Q        Q     Q 
Sbjct: 592  RREACQNAKAAQQSLQALEHEL--EQLDNTQKQLLADIDGLQRQRDQHSGELQKACGEQE 649

Query: 644  ELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAYQA 703
             LA    E+   L +     + +  +   IE L       + Q   AQ +         A
Sbjct: 650  SLAGAMPELCQRLGNEQAFDAHLAALSQDIEALSGQMEKLQTQLSDAQIRQTQCNERRAA 709

Query: 704  AIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSAM 763
              +   E++ ++    + +   L   GF+D  ++  AR+T + + + + +IA ++++ A 
Sbjct: 710  LQQTLSEARSREAAAKARFDTELAAKGFNDVVSFNQARMTADDMGDAKSRIATWQQQLAG 769

Query: 764  LSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLAD 823
            L     A    L +   P+L  L    T A++      Q +           R   QL  
Sbjct: 770  LKERMAAQQESLGDVLPPDLTELAALETAAQDGFNQCNQQWQVLNDTQVMYSRARAQLGT 829

Query: 824  LYQKNRALEAEYQVVGTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRY 883
              +    L+ EY VVGTLSD A+G TGA++SL RFVLGVLLDDVL++AS+RL +MS+GRY
Sbjct: 830  EAEVAARLDEEYAVVGTLSDAASGMTGARISLQRFVLGVLLDDVLIEASERLHRMSKGRY 889

Query: 884  LLKRKEERAKGNVGSGLDLMVEDSYSGKWRDVATLSGGESFMAALSLALGLSDVVQAYSG 943
             L R+E++AKGN  SGLDL VED+Y+GK R VATLSGGESFMAALSLALGLSDVVQAY+G
Sbjct: 890  RLLRREDKAKGNRASGLDLEVEDAYTGKLRPVATLSGGESFMAALSLALGLSDVVQAYAG 949

Query: 944  GIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDVLAT 1003
            GI+LDTLFIDEGFGSLD +SL+LA++TL+DLQ  GR IG+ISHVTE+KEQI  R+D+   
Sbjct: 950  GIKLDTLFIDEGFGSLDQDSLELAVRTLVDLQSSGRMIGVISHVTEMKEQIQTRVDIHKD 1009

Query: 1004 RMGSTLRL 1011
             +GS +RL
Sbjct: 1010 TVGSQIRL 1017