Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1018 a.a., SMC domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  637 bits (1642), Expect = 0.0
 Identities = 409/1029 (39%), Positives = 585/1029 (56%), Gaps = 30/1029 (2%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTKLGDAPLFLINGATGAGKSSILDAICYALYGETTGSE 60
            MRPL+L + AFGPFA  + IDF  LG  PLFLING TGAGK++ILDAIC+ALYG+TTG E
Sbjct: 1    MRPLRLTMTAFGPFADEQIIDFAALGSNPLFLINGPTGAGKTTILDAICFALYGKTTGDE 60

Query: 61   RTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL 120
            R G QMRCD A  + LT+V FEFEL   RY I R P+Q   KK GEG+T +   A L  +
Sbjct: 61   REGTQMRCDMADEQRLTQVSFEFELGSTRYLIRRVPEQPRAKKSGEGVTLQKSEAQLSRV 120

Query: 121  KSDGNE--LIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQ 178
             +DG+E  L+A K +     + +L GLDV QFRQVMVLPQGKFRELL A+SK RE+IF Q
Sbjct: 121  DTDGSETLLVAAKVSDATAQIEQLTGLDVDQFRQVMVLPQGKFRELLMADSKAREKIFSQ 180

Query: 179  LFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTH 238
            LFQT +Y +IE  L ++AAGIR++ E    +  G L    L S++ L  E   +AP L  
Sbjct: 181  LFQTHIYRRIEERLKQQAAGIRRDVEAMRNRRGGILEGAELASDQALIEEQALIAPELEL 240

Query: 239  AQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQATHIEMLRQQRQQAQ 298
            AQ+  +  +Q       +    L+L+  F R Q L  E    + +     + +Q+ Q A 
Sbjct: 241  AQAHKQQAEQALLTANQNLDKGLKLQSDFNRLQALQSEGEGLKARQLEATLWQQRLQAAG 300

Query: 299  KAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVPKL 358
            +A  L+ +++         + A   +++ Q +   A+    Q+QQA +Q   A E+    
Sbjct: 301  RANSLSPLYRAMQSRLGEQRSASQHLDECQQIHASAEQALNQSQQAFEQLG-ALEQEQLS 359

Query: 359  NEQRITWQRAEQKLLAQEN-VQQAVAKAERELQLATQNALNLQQASEKLEQELQNQRLEW 417
             +QR+T   A    L Q N + + +A  + ++Q A  +    +Q++++L+ EL   R E 
Sbjct: 360  QQQRLTQLEALAPQLEQLNQLSERLADGQAKMQAAEASG---KQSAKQLD-ELNQARQEI 415

Query: 418  EQQQRQLTR-LEVQKARMNQLVQ---QVQAREREQSLLNELQTAQQALLRFEQQHHHIQT 473
              ++  L R  E Q A    L     Q++  ER Q    E+   +Q L   +     +  
Sbjct: 416  VSRREILKRDAEPQLALQQSLSDGRAQLKVFERWQQQGLEIAALEQKLTAAKTAGSELAE 475

Query: 474  QAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQYSGDVVTKVQVEQ 533
            + +QA     +LE +WH  +AA LA  L+  EPCPVCGSLEHP  A    D+ +   + Q
Sbjct: 476  KHKQAIDAHKRLELSWHRGQAARLAAELSPGEPCPVCGSLEHPEPAMGEFDLPSDEALAQ 535

Query: 534  ARQQQQDWVQRQQEAFHAWQ--QQGFKTEQIAQNLTT--------LSSELTLQQVALLNE 583
            A+Q++ D +    +A   ++  QQ     Q++ +L          LS +    ++A L++
Sbjct: 536  AKQRESDALNLLHQARSEYKLLQQSLSNLQLSASLLQEELGEAAGLSFDEHQARLAELSD 595

Query: 584  LIEQQQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQA 643
              E+ +     +A L+         Q+E  E +    +  L++   +  +  + LA  + 
Sbjct: 596  GFERAKAAQQSLAQLET--------QLERSEHQGRELQTALDEARAHYGKLAEQLASDKG 647

Query: 644  ELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAYQA 703
            +   +   IP   SD+ TL +AI  +   I+ L+  + + R    +A++  A+ +A+ +A
Sbjct: 648  QYQQISAAIPQGFSDVATLSTAIADLTKTIDELKARQQSVRAAHAKAEQDNAAAKASLEA 707

Query: 704  AIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSAM 763
            A     E     E+ + ++QQ L  S F   +A+  A LT+     +  QI  +E+    
Sbjct: 708  ASRRLGEVNALAEQESLSFQQALATSEFESVAAFEQACLTEAEQAELSNQIKAFEQALIT 767

Query: 764  LSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLAD 823
                   L   LA    P++  L  +   AE+ M  AL  + +  +R   L +  +QL  
Sbjct: 768  HQANLSQLQEALAGCEAPDMSALEQQKMDAEQVMQQALAQWQKVSARAAQLSQTQEQLKA 827

Query: 824  LYQKNRALEAEYQVVGTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRY 883
            L  K  ALE +Y VVGTL+D+ANG TG K+SL RFVL VLLDDVLL+AS RL  MS+GRY
Sbjct: 828  LDLKAGALEQQYAVVGTLADVANGNTGNKISLQRFVLSVLLDDVLLEASHRLQLMSKGRY 887

Query: 884  LLKRKEERAKGNVGSGLDLMVEDSYSGKWRDVATLSGGESFMAALSLALGLSDVVQAYSG 943
             L RKEERAKGN  SGL+L VED+Y+ K R VATLSGGESFMAALS+ALGLSDVVQAY+G
Sbjct: 888  RLLRKEERAKGNKASGLELEVEDAYTAKVRSVATLSGGESFMAALSMALGLSDVVQAYAG 947

Query: 944  GIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDVLAT 1003
            GI+LDTLFIDEGFGSLD +SL+LAI+TL+DLQ  GR +G+ISHVTE+KEQI  R+D+L +
Sbjct: 948  GIKLDTLFIDEGFGSLDQDSLELAIRTLMDLQSAGRMVGVISHVTEMKEQIASRIDILKS 1007

Query: 1004 RMGSTLRLI 1012
              GS ++L+
Sbjct: 1008 AEGSEIKLV 1016