Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 993 a.a., SMC family ATPase from Methanococcus maripaludis JJ

 Score = 63.2 bits (152), Expect = 9e-14
 Identities = 177/1021 (17%), Positives = 420/1021 (41%), Gaps = 136/1021 (13%)

Query: 33  INGATGAGKSSILDAICYALYGETTGSERTGDQMRCDYAAPESLTEVIFEFELAGARYQI 92
           I G  G+GKSSI  A+ +AL+     + R  + M+   A+      V  EFE+ G  Y +
Sbjct: 28  IIGQNGSGKSSIFQAMNFALFAPRGNNFRIENLMQQGSAS----FSVELEFEMMGNTYLV 83

Query: 93  TRQPDQEIPKKRGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQ 152
            R               K+  + T   L  +G +L A   + + K + E++ +D   F  
Sbjct: 84  KR---------------KRFQNKTDDKLYVNG-KLNAESASEINKKMEEILEIDNSVFSN 127

Query: 153 VMVLPQGKFRELLTANSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKG 212
            + + QG+   L+    ++R+++ G+L   + Y +      E+   ++K  EE   +++G
Sbjct: 128 AIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKYEKAS----EKMNIVKKSYEETLLKLEG 183

Query: 213 TLSVVG--LESEEQLQTELTELAPVLTHAQSQLKAEQQQWDETKAHYQAAL-ELEQQFIR 269
            L+     LE+ E+L+ E++E + +L   + ++  +    ++ K    + L  +E++F  
Sbjct: 184 ELTQEPEILENLEKLKIEVSE-SEIL---KEEILKKYGNLEKLKLEKNSELTHMEEKFAE 239

Query: 270 KQQLVVEIATHQEQATHIEMLRQQR--------QQAQKAARLTAVHQQWHQAQKNLQQAK 321
             +L   +     +  +I +  Q          ++++  ++    ++++ + + N+++ K
Sbjct: 240 NNRLKENLKDVISEIKNINLEIQNFKNSLSLVVEESKNISKNEENYKKYLELELNIKELK 299

Query: 322 LKVEQ--------------QQTLLQQAKAQQQQAQQASQQASLACEEVPKLNEQRITWQR 367
            K+                +++L+++    ++  +   +      E + +  E+ +   +
Sbjct: 300 NKLINHKSNYESYNKLKTIEESLIKELNNLEESLKDNKKNPDELKENLKENEEKILILDK 359

Query: 368 AEQKLLAQENVQQAV--AKAERELQLATQNALNLQQASEKLEQELQNQRLEWEQQQRQLT 425
            ++K+   E +++ +   K  ++      +++ +   S K  +EL+ ++  +E   ++  
Sbjct: 360 IKEKIKELEFIEKQIYEIKIHKKTVETLFDSVKIYDDSIKTFEELKTKKNSYENLLKEKN 419

Query: 426 RLEVQKARMNQLVQQVQAREREQSLLNELQTAQQAL---LRFEQQHHHIQTQAEQAKLTA 482
            LE       +   +   + +  S L +L+  ++ +   + F++++  +  + ++     
Sbjct: 420 DLE------KKFQNETDEKTKLISELTDLKKIEEKINLEIEFKEKYEDLSEKIDKLNEIV 473

Query: 483 DKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQ-----YSGDVVTKVQVEQARQQ 537
            K E      + ++  L  T++  C VC S     K Q     Y+ ++  +    ++ ++
Sbjct: 474 LKKESKISETKNSKAELEKTKDS-CHVCQSKISEEKKQELLEKYNSEIENEKLSTESLKK 532

Query: 538 QQDWVQRQQEAFHAWQQQ--GFKTE----QIAQNLTTLSSELTLQQVALLNELIEQQQIL 591
           Q + +  ++E       +   FK +    +  +N +    E  ++    LNELI +    
Sbjct: 533 QLEIILNKKEHIKVKLNEIDSFKLKYGELKEKKNYSLKVEESIIETTEKLNELIGK---- 588

Query: 592 HSDIAALQQLNPD--LLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQ-AELASL 648
              I     LN +  L++ ++++           LEK  +N   + Q L + + +E+ + 
Sbjct: 589 ---INEYSSLNDEISLIENKLKD-----------LEKDYKNYNYSAQFLTKNEESEILNK 634

Query: 649 RQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAR------EQWVQAQKQFASVQAAYQ 702
           + E+   + D D+      +++N+ + L+  +   +      E+ +  + +  ++Q    
Sbjct: 635 KLELSKIIGDYDS-----SKIENEKKSLENLKDELKNIIYNLEREINLKTELKNIQNDIS 689

Query: 703 AAIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSA 762
           + I    E   + E   S ++  L     S E    +  +          +I    E   
Sbjct: 690 SKIGIV-ECYVKWEAEKSDFENKLSECKKSYEKYMESLAVLKNYSKTYSVEINNLNEFLN 748

Query: 763 MLSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQL- 821
               E++    KL E  R  +E  +  V    E    A + +    +  + + R  +++ 
Sbjct: 749 QKIAEKEHFCEKLLE-TRLTIEKNIQSVNYNPEMHENAKKVYENIFNEFNDISRTLERIT 807

Query: 822 ADLYQKNRALEAEYQVVGTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRG 881
           ++L  KN  +    + +  LS+    +   K+   +  L  +  ++   +     K  R 
Sbjct: 808 SELKLKNENIIYLNEKIQNLSNKKEERR--KIEEFKEYLDKIKREIF--SKDGFQKYLRE 863

Query: 882 RYLLKRKEERAKGNVGSGLDL-----MVEDSYS--GKWRDVATLSGGESFMAALSLALGL 934
           +Y+     +R    +    +L      ++D YS       V TLSGGE    +L+L LG+
Sbjct: 864 KYI--PLIQRHTNQIFQEFELPYSHIQLKDDYSLIVDGLPVETLSGGEQIAVSLALRLGI 921

Query: 935 SDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTI---GIISHVTELK 991
           S  V        ++ + +DE    LD +      + L+++ +  +TI    II+H  EL+
Sbjct: 922 SKAVCN-----NIECIILDEPTAYLDEDRR----KNLLNIFKNIKTINQMAIITHHQELE 972

Query: 992 E 992
           +
Sbjct: 973 Q 973