Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1018 a.a., exonuclease SbcC, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  625 bits (1613), Expect = 0.0
 Identities = 415/1038 (39%), Positives = 588/1038 (56%), Gaps = 48/1038 (4%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTKLGDAPLFLINGATGAGKSSILDAICYALYGETTGSE 60
            M+PL+L + AFGPFA  + IDFT+LGD PLFLING TGAGK+++LD I +ALYG+TTG+E
Sbjct: 1    MKPLQLSMSAFGPFASTQTIDFTELGDNPLFLINGPTGAGKTTLLDGISFALYGKTTGNE 60

Query: 61   RTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL 120
            R G QMRCD A    LTEV F F+L    Y+I R P+Q+  KK GEG T +   A L  +
Sbjct: 61   REGSQMRCDMADDNLLTEVTFSFKLGNTAYRIRRVPEQDRLKKNGEGSTVQKSEAQLFKI 120

Query: 121  KSDGNE--LIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQ 178
              DG E  L+A+K +     +  L GLDV+QFRQVMVLPQGKFRELL A+SK REQIF Q
Sbjct: 121  APDGTETLLVASKVSEATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKAREQIFSQ 180

Query: 179  LFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTH 238
            LFQT +Y +IE  L  +AA IR   +E   +  G L    L S+++L  E + + P L  
Sbjct: 181  LFQTHIYKRIEDILKAKAADIRALVKEQRARRDGILQTAELASDDELAAEFSRIEPELAA 240

Query: 239  AQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQATHIEMLRQQRQQ-A 297
            A   + A+++    T AH QA     +Q    QQ   E     E  +   +L +Q+   A
Sbjct: 241  A---IVAKERS---TAAHLQAL----KQHDSAQQRFAEFTRLSELESQATLLHEQQADIA 290

Query: 298  QKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACE-EVP 356
             + ARL    Q   Q  K L    L  EQ+ T+    +++ Q    A++ A    E E  
Sbjct: 291  AQTARLNVAKQA--QRLKPLLDNALSREQEATIANDQRSRAQMVLDAAKLALAKAETEAQ 348

Query: 357  KLNEQRITWQRAEQ----------KLLAQENVQQAVAKAERELQLATQNALNLQQASEKL 406
            +LN      +  EQ          +L    +V+QA+AKA   LQ   Q  +  Q+    L
Sbjct: 349  ELNGLEPRLRTQEQLANSLTSLAPQLAEFADVEQALAKANILLQ---QTKVQGQETKTAL 405

Query: 407  EQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQ----VQAREREQSLLNELQTAQQALL 462
               L  QR  +E Q   L +   ++    Q +QQ    ++  ++ Q +  ++   ++AL+
Sbjct: 406  AS-LVEQRSTYENQLPALQQQSERQLATAQALQQQRHLLELFKQWQQICVKVAQTEEALV 464

Query: 463  RFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQYS 522
                Q   +  Q + A      L+ +W   +AA LA  L   EPCPVCGS+EHP+ A   
Sbjct: 465  LAGLQGKTLNAQHQAALSDYKSLQLSWFQGQAAILARELKLEEPCPVCGSIEHPHPATSH 524

Query: 523  GDVVTKVQVEQARQQQQDWVQRQQEAFHAWQ--QQGFKTEQIAQNLTTLSS----ELTLQ 576
             ++ T  Q++ A+  + + +++  +A   ++  Q+  + +Q+  N    S     EL L+
Sbjct: 525  DNLPTDAQLQAAQNAEVNALEQLSKARAEYRGLQKQLEAQQLQANELASSLGDAVELPLE 584

Query: 577  Q-VALLNELIEQQQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTK-MTLEKQNQNQQQA 634
              +  L EL    +       ALQQL   +   Q    +Q L  T+ + LE++  +QQ+ 
Sbjct: 585  SHIQQLEELTRHAKQAEVATQALQQLQQQIKALQ----QQELGLTQQLELERERYHQQEG 640

Query: 635  WQTLAQLQAELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQF 694
               +A+L  +LA     IP E   L  L  AI   Q Q+E  +   H  R    QA +  
Sbjct: 641  --EVARLSGQLAEKALRIPDEYRSLTALNQAINDNQQQLEKTRGLIHALRTAQQQASEHC 698

Query: 695  ASVQAAYQAAIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQI 754
             + Q A +AAI+    +   Q          L  +GF+D  A  AA L DE +  +  +I
Sbjct: 699  VAAQTALEAAIQRCHSADELQALALGDLNSQLHLAGFTDRDALGAALLADEQMQALGERI 758

Query: 755  AQYEERSAMLSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMALALQAFTQHQSRMDGL 814
              Y+ + A+   +   L  +L++ + P+L+ L   + +  +++ +A  A++Q  +R   L
Sbjct: 759  ETYQRQCALNQSQLAQLKTQLSDVSVPDLDALEAMLAEKRQQLNIAEVAWSQLNTRFSLL 818

Query: 815  QRVAKQLADLYQKNRALEAEYQVVGTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQR 874
            ++   QL+ + QK +ALE EY ++GTL+D+ANG TG K+SL RFVL VLLDDVLL A+QR
Sbjct: 819  KQTQTQLSIVDQKAKALEDEYAIIGTLADVANGNTGNKISLQRFVLSVLLDDVLLAATQR 878

Query: 875  LMKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSGKWRDVATLSGGESFMAALSLALGL 934
            L  MS+GRY L RKE+RAKGN  SGL+L VED+Y+ K R VATLSGGESFMAALS+ALGL
Sbjct: 879  LHLMSKGRYRLLRKEDRAKGNKASGLELEVEDAYTAKVRPVATLSGGESFMAALSMALGL 938

Query: 935  SDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQI 994
            SDVVQAY+GGI+LDTLFIDEGFGSLD +SL+LAI+TL+DLQ  GR IG+ISHV+E+KEQI
Sbjct: 939  SDVVQAYAGGIKLDTLFIDEGFGSLDQDSLELAIRTLMDLQSAGRMIGVISHVSEMKEQI 998

Query: 995  GLRLDVLATRMGSTLRLI 1012
              R+D+L T  GS +++I
Sbjct: 999  NTRIDLLKTSHGSEIKVI 1016