Pairwise Alignments
Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056
Subject, 1044 a.a., exonuclease subunit SbcC from Klebsiella michiganensis M5al
Score = 286 bits (733), Expect = 4e-81
Identities = 321/1086 (29%), Positives = 479/1086 (44%), Gaps = 146/1086 (13%)
Query: 1 MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGET-- 56
M+ L L L+ G +IDF+ LF I G TGAGK+++LDAIC ALY ET
Sbjct: 1 MKILSLRLKNLNSLKGEWKIDFSAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60
Query: 57 --TGSERTGDQMRCDYAAPESLTEVIFEFELAGARYQI-------TRQPDQEIPKKRGEG 107
+ S+ D M D A E L EV EFE+ G Y+ QPD + R E
Sbjct: 61 LSSVSQSQNDLMTRDTA--ECLAEV--EFEVKGIAYRAFWSQNRARNQPDGNLQVPRVE- 115
Query: 108 MTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTA 167
+A DG +++A+K + L GLD +F + M+L QG+F L A
Sbjct: 116 ----------LARCEDG-KILADKVKDKLELTASLTGLDYGRFTRSMLLSQGQFAAFLNA 164
Query: 168 NSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQT 227
KER ++ +L T++Y QI +FE+ R E E+ Q G L L SEEQ Q
Sbjct: 165 KPKERAELLEELTGTEIYGQISAQVFEKHKQARVELEKIQAQASGVL----LLSEEQQQA 220
Query: 228 ELTELAPVLTHAQSQLKAEQ------QQWDETKAHYQAALELEQQFIRKQQLVVEIATHQ 281
L + LT + Q +EQ +QW + A Q +R+ Q +E A Q
Sbjct: 221 -LQQSLQALTSEEKQQVSEQTRLQNARQWQIRREELTAEDLRAQTALREAQSALEQAQPQ 279
Query: 282 EQAT----HIEMLRQQ--RQQAQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAK 335
A E LR Q RQQ Q AA L +Q + L ++ + + A+
Sbjct: 280 LSALLNAQPAERLRPQWTRQQEQTAA-LAQTRRQREEVNTRLHD---RLRLRAGIRLAAR 335
Query: 336 AQQQQAQQASQQASLACEEVPK-------LNEQRITWQRAEQKLLAQENVQQAVAKAERE 388
Q +Q Q S+ +E + L R +Q+ + Q VQ +A+ R
Sbjct: 336 QQYEQLHSRQQTLSVWLKEHDRFQLWGNALAGWRAAFQQQARDTQQQSAVQLRLAETHRR 395
Query: 389 LQLATQNALNL--QQASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQARER 446
L L L +Q S L Q + L +Q +L+ R+ QL QA ++
Sbjct: 396 LGELPPAGLTLDAEQVSAGLAQHAAARALR-QQLAALHGQLQPLAQRLLQLDAAGQASKQ 454
Query: 447 EQSLLNE-LQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNE 505
EQ L L +QA QQ ++ E A T+RA L
Sbjct: 455 EQERLEATLAQRRQAYKEKHQQFSDVKALCEMEARIA-----GLETERAR-----LQPGS 504
Query: 506 PCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQDWVQRQ--QEAFHAWQQQGFKTEQIA 563
PCP+CGS +HP A+Y + V Q ++D ++R+ Q A +G I
Sbjct: 505 PCPLCGSAQHPAVAEY------QALVPGVNQARRDALEREVKQLAEAGALARGELDALIK 558
Query: 564 QNLTTLSSELTL--QQVALLNELIEQQQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTK 621
Q + + +L Q+ AL + E L+ D+ + P L Q +E EQRL +
Sbjct: 559 QQQKEAAEKASLLQQEQALTSRWQETIAGLNIDLTPKDDI-PGWLNAQ-QEHEQRLYQHQ 616
Query: 622 MTLEKQNQNQQQAWQTLAQLQAELASLRQEIPPELS----DLDTLRSAIG---------- 667
L Q Q QQ+ Q L QLQ E + ELS DL + A G
Sbjct: 617 QRLAWQAQ-QQECQQQLQQLQREQEQRSAALAAELSAFALDLPAVGQAAGWLAQREEETR 675
Query: 668 ----------RVQNQIEILQK-----------AEHTAREQWVQAQKQFASVQAAYQAAIE 706
+Q QI+ L AE + W Q ++Q+ +Q +
Sbjct: 676 GWQAKQNERLALQEQIQQLAPLLEALPETDLAAEPAPLDGWRQVHDDCLALQSQWQTLGQ 735
Query: 707 AHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSAMLSG 766
+ Q Q +E+ + + L S F+D A+LAA L +E +ER E +A+
Sbjct: 736 QESQQQAQLKESEAQFSAALAASPFADRQAFLAALLDEETRQRLERLKQTLE--NALQQN 793
Query: 767 EQQALSRKLAEKNRPELEPLLVKVTQAEEKMALALQAFT----QHQSRMDGLQRVAKQLA 822
+ AL + A N + P + Q E++ LQ T ++ +R +++ KQ A
Sbjct: 794 QALALRAREALVNHSQQPPADADIGQPPEELQDKLQQLTSLLRENSARQGEIRQQLKQNA 853
Query: 823 DLYQKNRALEAEYQVV-------GTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRL 875
+ Q+ + L + + G L+ + + G K +F G+ LD+++ A+ +L
Sbjct: 854 ENQQRQQLLRLQMERAAQEVEDWGWLNSLIGSREGDK--FRKFAQGLTLDNLVWLANHQL 911
Query: 876 MKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSGKW-RDVATLSGGESFMAALSLALGL 934
++ GRYLL+RK A L+L V D++ RD TLSGGESF+ +L+LAL L
Sbjct: 912 NRL-HGRYLLQRKASDA-------LELEVVDTWQADAVRDTRTLSGGESFLVSLALALAL 963
Query: 935 SDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQI 994
SD+V S R+D+LF+DEGFG+LD E+LD A+ L L G+ IG+ISHV +KE+I
Sbjct: 964 SDLV---SHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKIIGVISHVEAMKERI 1020
Query: 995 GLRLDV 1000
+++ V
Sbjct: 1021 PVQIKV 1026