Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Exonuclease SbcD from Pseudomonas fluorescens FW300-N1B4

 Score =  128 bits (322), Expect = 3e-34
 Identities = 106/341 (31%), Positives = 160/341 (46%), Gaps = 29/341 (8%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           ++  HTSDWHLG+  H      + +  L  L+  L+ +  D +++AGDI+D   PP  A 
Sbjct: 5   LRLFHTSDWHLGQNLHGQERDFEHACFLDWLLRQLKLDQPDVLLIAGDIFDTVNPPVKAQ 64

Query: 61  D-LLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFA----------DF 109
           + L D +VS    +    ++MI GNHD   R+   A  M+    H             D 
Sbjct: 65  ERLYDFIVSAHEQQPLLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA 124

Query: 110 EQMMQPLVLHSPQAGEVAFW--GMPYHDPELV--RHYYHNDITTHDAAHQFLCESILAQR 165
           E+++ PL      +GE+A W   +P+  P  V   H   N +      H++L E+  A+R
Sbjct: 125 ERLLLPL---PDASGEIAAWCLALPFLRPAEVTGAHLGDNYLRGIGQVHEWLIEAANAKR 181

Query: 166 NPSQRHVLISHCFVDGAMESE-SERPLSIGGSDRVDHRHFLP-FDYVALGHLHQPQ-MKG 222
            P Q  + ISH  + G   SE SER L IG ++ +    F P   YVALGHLH+PQ + G
Sbjct: 182 KPGQALIAISHAHMAGGSVSEDSERSLIIGNAEALPASLFGPSISYVALGHLHKPQKVNG 241

Query: 223 AEHIRYSGSLMKYSFGEQHQNKGATLVELGQQGFISATHIPLIAP---HQMRIIEGELEA 279
            E IRY GS +  SF E +       ++L  +  +S    P + P   H  R+    L  
Sbjct: 242 EERIRYCGSPIPLSFSEINYQHQILDIQLDGETLVSVE--PRLIPRSVHLQRLGAAPLAE 299

Query: 280 ILAAGATDPQADDYLLVRLLDKHAILDPMEKLRQVYPNVLH 320
           IL   A  P  D   L+  + +   L+   +L +  P++ H
Sbjct: 300 ILLQLADLPNID---LLADIQRQPWLEVRVRLDEPQPDLRH 337