Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., exonuclease SbcD, putative (RefSeq) from Shewanella amazonensis SB2B

 Score =  367 bits (941), Expect = e-106
 Identities = 186/380 (48%), Positives = 253/380 (66%), Gaps = 3/380 (0%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+F+HTSDWHLGR  H  SLLD+Q+ +L  L+  +  + VDA+++AGDI+DRS+PP AA+
Sbjct: 1   MRFIHTSDWHLGRTLHNQSLLDEQAQMLETLLTLIETHEVDALVIAGDIFDRSVPPAAAV 60

Query: 61  DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFADFEQMMQPLVLHS 120
            LLD+ +  +  +LK  ++ I GNHDG +RL F A+QM  +GL+I       ++P+ +  
Sbjct: 61  SLLDDFLDKVVQQLKVSVIAIGGNHDGQERLAFGARQMAGAGLYIQGPVRASIEPVHIDG 120

Query: 121 PQAGEVAFWGMPYHDPELVRHYYHN-DITTHDAAHQFLCESILAQRNPSQRHVLISHCFV 179
            Q G   F+ +PY +P LVRH  ++ DI +H  A   L   + A  +     ++ISHCF+
Sbjct: 121 KQ-GAAFFYPIPYAEPALVRHLLNDEDIHSHQDAMAALLAKVTAHNSDGLPKIVISHCFL 179

Query: 180 DGAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLHQPQMKGAEHIRYSGSLMKYSFGE 239
           DG  ES+SERPLSIGG+D++    F PFDY ALGHLH PQ KGAEH+RYSGS +KYSF E
Sbjct: 180 DGGNESDSERPLSIGGADKISPALFAPFDYAALGHLHGPQYKGAEHVRYSGSPLKYSFSE 239

Query: 240 QHQNKGATLVELGQQGFISATHIPLIAPHQMRIIEGELEAILAAGATDPQADDYLLVRLL 299
           QHQNK  TLV +          +P+     +RIIEG L+A+L  GA+DP  DDYL+VRLL
Sbjct: 240 QHQNKSVTLVNILPGQAPDIRLLPIKPQRDVRIIEGYLDALLTRGASDPGRDDYLMVRLL 299

Query: 300 DKHAILDPMEKLRQVYPNVLHLEKPGMLIGVDQE-MGKARLARGELDMFRDFFLEAKREP 358
           D HAIL+PM KLR +YPNVLHLE+ G++     E  G+ R+ + EL MF DFF + + EP
Sbjct: 300 DTHAILEPMAKLRAIYPNVLHLERTGLMQERALEGPGRERMQKSELTMFEDFFTQVQGEP 359

Query: 359 LSEQQEKVVIEVIARLKAEG 378
           LS  Q+ ++ E+IA L  EG
Sbjct: 360 LSGPQKTLMSELIASLHREG 379