Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., exonuclease subunit SbcD from Rahnella sp. WP5

 Score =  107 bits (268), Expect = 5e-28
 Identities = 90/301 (29%), Positives = 138/301 (45%), Gaps = 27/301 (8%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+ +HTSDWHLG+ F   S   +  A L  L   ++ + VDAVIVAGDI+D   PP+ A 
Sbjct: 1   MRLIHTSDWHLGQYFFTKSRAAEHQAFLRWLTGQVQQHQVDAVIVAGDIFDTGSPPSYAR 60

Query: 61  DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFADF-EQMMQPLVLH 119
           +L +  V V   +    L+++ GNHD    L  + + +      + A   E + + +++ 
Sbjct: 61  ELYNRFV-VELQQTGCQLVVLAGNHDSVATLNESRELLSCLNTRVIATVGENLSEQILVL 119

Query: 120 SPQAGE--VAFWGMPYHDPELVRHYYHNDITTHDAAHQFLCESILA-------QRNPSQR 170
           S + G+       +P+  P   R    +      +  Q   +  +A       Q   ++R
Sbjct: 120 SQRDGKPGAILCAIPFLRP---RDLLASQAGQSGSDKQLALQEAIAAHYDALWQAAQARR 176

Query: 171 H--------VLISHCFVDGAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLHQPQ-MK 221
                    +   H    G   S+S R + IG  D    + F P DYVALGH+H+ Q + 
Sbjct: 177 DELGMPLPIIATGHLTTVGVSTSDSVRDIYIGTLDAFPAQAFPPVDYVALGHIHRAQCVA 236

Query: 222 GAEHIRYSGSLMKYSFGEQHQNKGATLVEL--GQQGFISATHIPLIAPHQMRIIEGELEA 279
             EHIRYSGS +  SF E  + K   L++        I    IP+  P  M+II+G L  
Sbjct: 237 KNEHIRYSGSPIALSFDELSKAKSVYLLDFDGATLNAIDTLEIPVFQP--MQIIKGSLAE 294

Query: 280 I 280
           I
Sbjct: 295 I 295