Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., nuclease SbcCD, D subunit (RefSeq) from Shewanella loihica PV-4

 Score =  373 bits (957), Expect = e-108
 Identities = 189/375 (50%), Positives = 251/375 (66%), Gaps = 3/375 (0%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           MKF+HTSDWH+GRQ H  SLLDDQ  VL Q++   + + VDA+IVAGDIYDRS+PP  A+
Sbjct: 1   MKFIHTSDWHIGRQLHNQSLLDDQRHVLDQIVSLAKTHEVDALIVAGDIYDRSVPPANAV 60

Query: 61  DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFADFEQMMQPLVLHS 120
            LLDEV++     L   ++MI GNHDG +RLGFAA+QM+ SGLHI       + P+ L S
Sbjct: 61  ALLDEVLNEFIA-LGIDVIMIAGNHDGHERLGFAARQMQASGLHIIGPLAPKVSPIRLSS 119

Query: 121 PQAGEVAFWGMPYHDPELVRHYYHNDITTHDAAHQFLCESILAQRNPSQRHVLISHCFVD 180
             +G+  F+ +PY +P  VR     + ++H+ A   L + +    +     V+I HCF+D
Sbjct: 120 G-SGDAIFYPLPYAEPATVRQQLECEASSHEEAMVELLKQVQDHDSQGLPKVVIGHCFLD 178

Query: 181 GAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLHQPQMKGAEHIRYSGSLMKYSFGEQ 240
           G  ES+SERPLSIGG+D++  +HF PFDY ALGHLH PQ KGAE +RYSGS++KYSF EQ
Sbjct: 179 GGSESDSERPLSIGGADKISPKHFAPFDYTALGHLHGPQYKGAEQVRYSGSILKYSFSEQ 238

Query: 241 HQNKGATLVELGQQGFISATHIPLIAPHQMRIIEGELEAILAAGATDPQADDYLLVRLLD 300
           HQNK  TLVEL      + T +PL     +RIIEG L  +L  G  DP  +DYL+VRLLD
Sbjct: 239 HQNKSVTLVELNAGSPANMTLLPLSPLRDVRIIEGALADLLQQGVKDPGREDYLMVRLLD 298

Query: 301 KHAILDPMEKLRQVYPNVLHLEKPGMLIGVDQ-EMGKARLARGELDMFRDFFLEAKREPL 359
           KHAILD M KLR VYPNVLHLE+ G++    Q  +    + +GEL+MF+DFF +   +PL
Sbjct: 299 KHAILDAMGKLRSVYPNVLHLERTGLMASNQQLAIASDHIKKGELEMFKDFFTQVSGDPL 358

Query: 360 SEQQEKVVIEVIARL 374
           +E Q +++ + +  L
Sbjct: 359 NEAQLELITQALDEL 373