Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., exonuclease SbcD, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  380 bits (975), Expect = e-110
 Identities = 192/386 (49%), Positives = 265/386 (68%), Gaps = 9/386 (2%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+F+HTSDWH+GRQ H  SLLDDQ+ VL Q++   + + VDAVI+AGDIYDRSIPP +A+
Sbjct: 1   MRFIHTSDWHIGRQLHNQSLLDDQAYVLDQIVALAQQHSVDAVIIAGDIYDRSIPPGSAV 60

Query: 61  DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFADFEQMMQPLVLHS 120
            LL++V++ +  +L   +LMI GNHDG +RLGFAAKQM  SGLHI    +  + P+ L S
Sbjct: 61  ALLNDVLNRLVNQLGIQVLMIAGNHDGHERLGFAAKQMAASGLHIIGPLQAELVPIRLTS 120

Query: 121 PQAGEVAFWGMPYHDPELVRHYYHND-----ITTHDAAHQFLCESILAQRNPSQRHVLIS 175
           P +G+  F+ +PY +P  VR  +  D     +++H+ A   L E + +  +     V++S
Sbjct: 121 P-SGDAYFYPLPYAEPTTVRQVFETDAKGLSVSSHEEAMALLLEQVRSHDSQGLPKVVVS 179

Query: 176 HCFVDGAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLHQPQMKGAEHIRYSGSLMKY 235
           HCF+DG  ESESERPLSIGG+D++  R F  FDYVALGHLH PQ KG E +RYSGS++KY
Sbjct: 180 HCFLDGGSESESERPLSIGGADKITPRLFSEFDYVALGHLHGPQYKGCEQVRYSGSILKY 239

Query: 236 SFGEQHQNKGATLVELGQQGFISATHIPLIAPHQMRIIEGELEAILAAGATDPQADDYLL 295
           SF EQHQ+K  TLV++  Q       +PL A   +R+IEGEL  +L  G TD + +DYL+
Sbjct: 240 SFSEQHQHKSVTLVDIAAQFPAQIQLLPLTALRDLRMIEGELANLLEEGRTDAKREDYLM 299

Query: 296 VRLLDKHAILDPMEKLRQVYPNVLHLEKPGMLIGVDQE--MGKARLARGELDMFRDFFLE 353
           VRLLDKHAILD M KLR VYPNVLHLE+ G++ G DQ   + +  + +GE+ MFRDFF +
Sbjct: 300 VRLLDKHAILDAMGKLRSVYPNVLHLERTGLMAG-DQAVVLNRDHIKKGEMAMFRDFFAQ 358

Query: 354 AKREPLSEQQEKVVIEVIARLKAEGI 379
              + L+  Q+ V+ +++ +L  +G+
Sbjct: 359 VSGDELTPAQQAVMEDILTQLHRDGL 384