Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., exodeoxyribonuclease I subunit D (RefSeq) from Shewanella sp. ANA-3

 Score =  381 bits (979), Expect = e-110
 Identities = 193/380 (50%), Positives = 261/380 (68%), Gaps = 7/380 (1%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+F+HTSDWH+GRQ H  SLL+DQ+ VL Q++     + VDAVI+AGDIYDRSIPP +A+
Sbjct: 1   MRFIHTSDWHIGRQLHNQSLLEDQAYVLDQIVTLAEQHSVDAVIIAGDIYDRSIPPASAV 60

Query: 61  DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFADFEQMMQPLVLHS 120
            LLDEV++ +  EL   +L+I GNHDG +RLGFAAKQM  SGLHI    +  + P+ L S
Sbjct: 61  ALLDEVLNRLITELGLQVLLIAGNHDGHERLGFAAKQMAASGLHIIGPLQADLTPIRLTS 120

Query: 121 PQAGEVAFWGMPYHDPELVRHYYHND-----ITTHDAAHQFLCESILAQRNPSQRHVLIS 175
           P +G+  F+ +PY +P  VR  +  +     +++H+ A   L E + +  +     V++S
Sbjct: 121 P-SGDAYFYLLPYAEPATVRQVFEAEANGLSVSSHEEAMTLLLELVRSHDSQGLPKVVVS 179

Query: 176 HCFVDGAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLHQPQMKGAEHIRYSGSLMKY 235
           HCF+DG  ESESERPL+IGG+D++  R F  FDYVALGHLH PQ KG EH+RYSGS++KY
Sbjct: 180 HCFLDGGSESESERPLNIGGADKISPRLFSEFDYVALGHLHGPQYKGCEHVRYSGSILKY 239

Query: 236 SFGEQHQNKGATLVELGQQGFISATHIPLIAPHQMRIIEGELEAILAAGATDPQADDYLL 295
           SF EQHQ+K  TLV++  Q       +PL A   +RIIEGEL  +L  G TD + +DYL+
Sbjct: 240 SFSEQHQHKSVTLVDVAAQTPAQIQLLPLTALRDVRIIEGELAHLLDLGKTDAKREDYLM 299

Query: 296 VRLLDKHAILDPMEKLRQVYPNVLHLEKPGMLIGVDQ-EMGKARLARGELDMFRDFFLEA 354
           VRLLDKHAILD M KLR VYPNVLHLE+ G++ G     + +  + +GE+ MFRDFF + 
Sbjct: 300 VRLLDKHAILDAMGKLRSVYPNVLHLERTGLMAGEQAVTLNRDHIKKGEMAMFRDFFSQV 359

Query: 355 KREPLSEQQEKVVIEVIARL 374
             E LS+ Q+ V+ E++ +L
Sbjct: 360 SGEALSDAQQAVMDEILTKL 379