Pairwise Alignments

Query, 326 a.a., catabolite repressor/activator from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., transcriptional regulator, LacI family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 80/321 (24%), Positives = 140/321 (43%), Gaps = 10/321 (3%)

Query: 5   EIAKLAGVSKTTASYVINGKAQKYRISEKTQHKVMAVVEQYNFRPDHAASALRAGNSRSF 64
           ++A++AGVS++  S V    A    +S KT  KV A  E+  +RP+  A +L  G S+  
Sbjct: 10  DVARVAGVSQSAVSRVFTPGAS---VSPKTAKKVRAAAEELGYRPNVLARSLITGQSKII 66

Query: 65  GLIIPDLENTSYARLAKLLEQNSRQAGYQILI-ACSDDDPQIEMAAAEALVSRRIDALFV 123
           GL++  L+N  Y    + L    +  GY IL+   S    Q++    E L+  ++D +  
Sbjct: 67  GLVVAYLDNQFYPDALERLSMALQDRGYHILVFMASGTGAQVDRVIGE-LLDYQVDGIIT 125

Query: 124 ASGIPSASEYYLKLQQSGTPVIAIDRALDDEYFSCVISEDFGAAFELTRSVLTQDVHSVG 183
           AS +  + E   +   +G PV+  +R  DD   S V S++F  A E+ R +       + 
Sbjct: 126 AS-VGMSDELTKRCNSAGIPVVMFNRGQDDARLSSVTSDNFTGAREIARFLAAGGHERIA 184

Query: 184 LVGALPELNVSREREQGFAMAVKQRGLPTTLGYGEHFNREEGRKVFAKWVANDQLPDAVV 243
            +      +  R+R+ GF   ++  GL        H+ R E +       A    PDA+ 
Sbjct: 185 HITGWTGSSTGRDRKAGFLAGLEDAGLAAHGIVDGHYRRAEAQAAAHALFAGAAPPDAIF 244

Query: 244 ATSYTLLEGILDVLLEQ--PELMQKVRLATFGDNRLLDFLPIRVNS--LPQQFELIADSA 299
             +  +   ++D +  +    + + V +  + D  L D+   R+ +   P    + A   
Sbjct: 245 VGNDHMAFAVMDTVRGELGVRIPEDVSIVGYDDVPLADWGAYRLTTWRQPSNRMVAATVE 304

Query: 300 LALALNASAKRYQTGIELIPR 320
           L L L   A R    +E+  R
Sbjct: 305 LLLGLIDDADRAPEKLEIAGR 325