Pairwise Alignments

Query, 234 a.a., HNH endonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., HNH endonuclease (RefSeq) from Shewanella sp. ANA-3

 Score =  130 bits (326), Expect = 3e-35
 Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 4/149 (2%)

Query: 84  GTAKIKSFDWILEE-KHLAGVDGLWYALNYSESVDITSIEEVVHPETYIEGATKEISVNA 142
           G  K +    IL E + LA V    Y  N++ ++  + I E      + EGA K I ++ 
Sbjct: 103 GAGKHRQLATILAEFQSLAKVH---YGQNFNPTLLPSEISEAETGFVFHEGAMKTIELSV 159

Query: 143 YERNPDARAKCILHYGCKCYVCKFDFQEVYGDIGKGFIHVHHEVSLAEIKKEYSVDPIKD 202
           +ER P AR  CI HYG  C+VC FDF+  YGDIGKGFIHVHH V LA +     V+PI+D
Sbjct: 160 HEREPAARRACIEHYGVSCHVCGFDFEHAYGDIGKGFIHVHHRVDLALVSNRREVNPIED 219

Query: 203 LKPLCPNCHGIIHRTHPPISVDSLINLLR 231
           L P+CPNCH ++H   P ++VD L  LL+
Sbjct: 220 LIPVCPNCHAMLHTETPAMAVDKLKELLK 248