Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas fluorescens FW300-N2E2

 Score =  108 bits (269), Expect = 2e-28
 Identities = 86/266 (32%), Positives = 129/266 (48%), Gaps = 48/266 (18%)

Query: 51  EEFLTYLAVQGKVATKTQSLA--LNSLSFLYKEILKTPLSL---EIRFQRSQLERKLPVV 105
           E  L +LA + +   K +S A  L+ L   Y+ +L+  L      +R +  QL R LP  
Sbjct: 54  ELILDHLAWRLEQNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKS 113

Query: 106 LTRDEIRRLL------EIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQG 159
           L+  ++  LL      E +  + +  +++LY  GLR+ E + L ++ ++   G +R+  G
Sbjct: 114 LSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRV-MG 172

Query: 160 KGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRW 219
           KG K R V + +E        I   +RY  RD   +  GG              P +   
Sbjct: 173 KGSKERLVPMGEEA-------IVWVERYM-RDARHELLGG-------------RPSDV-- 209

Query: 220 HYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLE 279
             LFPS           +R   M        ++  A+ AGI K+++ HTLRH+FATHLL 
Sbjct: 210 --LFPS-----------LRGEQMTRQTFWHRIKHQAKVAGINKSLSPHTLRHAFATHLLN 256

Query: 280 VGADIRTVQEQLGHTDVKTTQIYTHV 305
            GAD+R VQ  LGH+D+ TTQIYTHV
Sbjct: 257 HGADLRVVQMLLGHSDLSTTQIYTHV 282