Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas stutzeri RCH2

 Score = 99.8 bits (247), Expect = 7e-26
 Identities = 83/266 (31%), Positives = 126/266 (47%), Gaps = 48/266 (18%)

Query: 51  EEFLTYLAVQGKVATKTQSLA--LNSLSFLYKEILKT---PLSLEIRFQRSQLERKLPVV 105
           E  L +LA +     K +S A  L+ L   Y+ +L+     +   +R    +L R LP  
Sbjct: 54  EIILDHLAWRLNNGYKARSTARFLSGLRGFYRYLLREGEIAVDPTLRVDLPRLGRPLPKA 113

Query: 106 LTRDEIRRLL---EIVDP---KHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQG 159
           L+  ++  LL   ++ DP   + +  +++LY  GLR+ E + L ++ +    G +R + G
Sbjct: 114 LSEADVEALLAAPDLGDPIGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTF-G 172

Query: 160 KGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRW 219
           KG K R V L  E    L+         Y R+   +  GG       K +          
Sbjct: 173 KGNKERLVPLGDEALHWLER--------YQREGRDELLGG-------KAR---------- 207

Query: 220 HYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLE 279
             LFPS           +R   M        ++  A+ AGI  +++ HTLRH+FATHLL 
Sbjct: 208 DVLFPS-----------LRGDQMTRQTFWHRIKLHAKVAGIATSISPHTLRHAFATHLLN 256

Query: 280 VGADIRTVQEQLGHTDVKTTQIYTHV 305
            GAD+RTVQ  LGH+D+ TTQIYTH+
Sbjct: 257 HGADLRTVQMLLGHSDLSTTQIYTHI 282