Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score = 93.2 bits (230), Expect = 7e-24
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 61/278 (21%)

Query: 49  EVEEFLTYLAVQGKVATKTQSLALNSL----SFLYKEILKTPLSLEIRFQRSQLERKLPV 104
           ++  +L++LA QG  A+ +Q+  L++L     FLY E L+T     I     +  R LP 
Sbjct: 55  DLRSYLSHLAGQGFKAS-SQARRLSALRQFYKFLYAEGLRTDDPTGI-LDAPKKARTLPK 112

Query: 105 VLTRDEIRRLLEIVDPK--------------HQLPIKLLYGSGLRLMECMRLRVQDIDFD 150
            L+ +++ RL+   + +              H L I+LLY +G+R+ E + L    +  +
Sbjct: 113 TLSIEDVTRLIGQAEAEAKSGSDDVMAKLRMHAL-IELLYATGMRVSELVSLPASVLAQN 171

Query: 151 YGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKY 210
            G   I +GKG K R V L++     ++                  YG      AL+E+ 
Sbjct: 172 -GRFLIIRGKGNKERLVPLSQAAIRAMRA-----------------YG-----EALQEES 208

Query: 211 PNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIE-KTVTCHTL 269
            ++P+      LFPS   S           H+   V  + ++  A  AGI    ++ H L
Sbjct: 209 ADSPW------LFPSNGKS----------GHLPRQVFARDLKSLAARAGIRVAAISPHVL 252

Query: 270 RHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLD 307
           RH+FA+HLL  GAD+R VQE LGH+D+ TTQIYTHVL+
Sbjct: 253 RHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLE 290