Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., phage integrase family site specific recombinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  211 bits (538), Expect = 1e-59
 Identities = 113/272 (41%), Positives = 170/272 (62%), Gaps = 3/272 (1%)

Query: 2   KSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQG 61
           +S FL  +RE M+ R Y+  T + YL+WI  +I FH+K+HP  MG  EV +FLT++A Q 
Sbjct: 4   QSPFLQGIREEMRMRGYSISTGKTYLYWIKAFIRFHHKRHPVEMGQAEVAQFLTFIANQR 63

Query: 62  KVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDPK 121
            VA  TQ  ALN+L +LY + L   L   + F  S  +R  PVVLT DE++R+L  ++ +
Sbjct: 64  NVAINTQKTALNALVYLYHKHLHQELG-SLGFHYSSKQRFQPVVLTADEVKRILNCLEGR 122

Query: 122 HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 181
            +L +++LYGSGLR+ EC+RLRVQD+D ++ ++ +  GKG K+R   L++     L+  I
Sbjct: 123 SRLIVEILYGSGLRISECLRLRVQDVDLEHLSLTVRDGKGRKDRKTLLSQHCATALQSYI 182

Query: 182 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 241
             A     +D  Q    G  LP AL  KYPNA  +  W ++FPS  +   P + V+ RHH
Sbjct: 183 TCATALQQKDNLQGL--GPSLPYALGRKYPNAFRKSIWMFIFPSHAICHHPITGVLCRHH 240

Query: 242 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 273
           ++++V++KA+  +  ++G+ K VTCHT RHSF
Sbjct: 241 LHQSVVRKALAVAVAKSGVNKRVTCHTFRHSF 272