Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., phage integrase family site specific recombinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  281 bits (720), Expect = 1e-80
 Identities = 149/318 (46%), Positives = 209/318 (65%), Gaps = 3/318 (0%)

Query: 3   SQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGK 62
           S FL +VR+ ++ R Y+ +T + YLHWI  YI F+ K+HP  MG  E+  FLTYLAV+  
Sbjct: 4   SPFLNAVRDSIRLRGYSLRTEKTYLHWIKFYILFNQKRHPDTMGSAEITAFLTYLAVERH 63

Query: 63  VATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDPKH 122
           VA  TQ +ALN+L +LY++ L+  L  E+ F  +  +R LP+V+T+ E+  +L  +   H
Sbjct: 64  VAANTQKVALNALIYLYQKFLQIELG-ELPFSLATKQRSLPIVVTQTEVAHILAKLSGVH 122

Query: 123 QLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIA 182
              I++LYGSGLR+ EC+RLRVQD+D +  ++ +  GKG K+R   L++     L +QI 
Sbjct: 123 LHVIQMLYGSGLRVTECLRLRVQDVDLERLSVTVHDGKGNKDRQTLLSRSCLNWLPDQIE 182

Query: 183 LAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHM 242
            +     +D +Q+  G   +PTAL  KYPNA  E  W YLFPS  L   P +  + RHH+
Sbjct: 183 HSLNIQQKD-NQRGIGPS-MPTALSVKYPNAFREPGWMYLFPSSGLCPHPITGEICRHHL 240

Query: 243 NETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIY 302
           +++ ++KA+R + + AG+ K V CHT RHSFATHLL+ G DIRTVQE LGH DVKTTQIY
Sbjct: 241 HDSAIRKALRIAVRHAGVRKKVNCHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIY 300

Query: 303 THVLDRGASGVLSPLSRL 320
           THVL +  +G +SPL RL
Sbjct: 301 THVLGQHYAGTVSPLDRL 318