Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 94/319 (29%), Positives = 142/319 (44%), Gaps = 50/319 (15%)

Query: 19  AKKTIEAYLHWITRYIHFHNKKHPS--LMGDKEVEEFLTYLAVQGKVATKTQSLALNSL- 75
           A++T+EAY   +  Y  F  +K      +    +  +L  +A  G +A ++Q+  L+ L 
Sbjct: 36  ARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAG-LAPRSQARKLSCLR 94

Query: 76  ---SFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP-------KHQLP 125
               FL  E  + P    I     +L R LP VL+  E+  LL   +        + ++ 
Sbjct: 95  QFHGFLVSEG-RRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAGEGARGLRARVL 153

Query: 126 IKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAK 185
           ++LLY +GLR+ E + L +   + D   I + +GKG K R V L       L++ +    
Sbjct: 154 LELLYSTGLRVSELVSLPLSVANRDPETILV-RGKGDKERLVPLGLPARAALRDWL---- 208

Query: 186 RYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNET 245
                         +  PT L      A       +LFPS               H+   
Sbjct: 209 --------------IARPTTLPAS--GAARRRADRFLFPS----------SAAEGHLTRD 242

Query: 246 VLQKAVRRSAQEAGIEKT-VTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTH 304
              K +   A  AGI+   V+ H LRH FA+H+L  GAD+R VQ  LGH D+ TTQIYTH
Sbjct: 243 GFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTH 302

Query: 305 VLDRGASGVL---SPLSRL 320
           VLD   + ++    PL+RL
Sbjct: 303 VLDDRLTTLVRTAHPLARL 321