Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  111 bits (277), Expect = 3e-29
 Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 59/300 (19%)

Query: 22  TIEAYLHWITRYIHFHNKKHPSLMGDK--EVEEFLTYLAVQGKVATKTQSLALNSLSFLY 79
           T++AY   ++ +  + NK+  SL+     EV ++L      G   T +  L L+SL   Y
Sbjct: 31  TLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHGFAKTSSARL-LSSLRRFY 89

Query: 80  KEILKTPLSLEI----RFQRSQLERKLPVVLTRDEIRRLL------EIVDPKHQLPIKLL 129
           K +L   L +E+      +  +L RKLP  L+  ++ RLL      + V+ + +  ++LL
Sbjct: 90  KYLLAKKL-IEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPNREDPVEARDRAMLELL 148

Query: 130 YGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYD 189
           Y SGLR+ E + L +  +    G +RI  GKG K R V   ++    +++ +  A+    
Sbjct: 149 YASGLRVSELVGLTLDQMSLRQGVVRI-VGKGSKERLVPFGEQAGAEIEDYLKAAR---- 203

Query: 190 RDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM----RRHHMNET 245
                                               F+L     SDV+    R + M   
Sbjct: 204 ------------------------------------FELLKGKASDVVFPSKRGNMMTRQ 227

Query: 246 VLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
                ++  AQ AGI   ++ HTLRH+FATHLL  GAD+R VQ  LGH+D+ TTQIYTHV
Sbjct: 228 TFWHRIKLYAQRAGIAVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 287