Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., site-specific tyrosine recombinase XerD from Marinobacter adhaerens HP15

 Score =  112 bits (280), Expect = 1e-29
 Identities = 94/299 (31%), Positives = 134/299 (44%), Gaps = 51/299 (17%)

Query: 20  KKTIEAYLHWITRYIHF-HNKKHPSLMGDKEVEEFLTYLA---VQGKVATKTQSLALNSL 75
           +KT +AY   + R   +  ++    L+ D    + L +++    QG V + T +  L+ L
Sbjct: 24  EKTRQAYRSDLLRLSEWLESQPGKPLLRDVRRTDLLAWMSSGLAQG-VKSSTAARRLSGL 82

Query: 76  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEIVDP------KHQLPI 126
              Y+ +L+  L  E   +R    +L R+LP  LT  E+  LL   DP      + +  +
Sbjct: 83  RRFYRFLLREGLITEDPTLRIDSPRLPRRLPDSLTEGEVDALLSEPDPGIAIELRDKAML 142

Query: 127 KLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKR 186
           ++LYG GLR+ E   LRV  ++   G +RI  GKG K R V L +E              
Sbjct: 143 EILYGCGLRVSELTELRVDQVNLRQGVVRI-TGKGDKERLVPLGEEAVD----------- 190

Query: 187 YYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETV 246
                         WL   +KE  P          LFP             R   M    
Sbjct: 191 --------------WLLQYMKEGRPELLKGRSCDALFPG-----------NRAAAMTRQT 225

Query: 247 LQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
               ++  A   GI K ++ HTLRH+FATHLL  GAD+R VQ  LGH+D+ TTQIYTHV
Sbjct: 226 FWHRIKHYAVRVGIRKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV 284