Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  114 bits (285), Expect = 3e-30
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 44/303 (14%)

Query: 3   SQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGK 62
           S  L    + +  R Y+ +T  AYL+ IT+  H+ N+   ++  D+++  +  YL ++  
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPLDNIT-DEQLTAYFRYLNLERH 60

Query: 63  VATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLL-EIVDPK 121
            +  T  L LN + F Y+ +LK   ++++   +     KLP +L+  +I  LL    + K
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKRP--HKLPQLLSCQDIAALLYHCQNLK 118

Query: 122 HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 181
            +  + L YG GLR+ E   ++V DID     +++ QGKG  +R V L+  L       +
Sbjct: 119 QRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTL-------L 171

Query: 182 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 241
            L ++Y                               W    P   L      DV+  + 
Sbjct: 172 ILLRQY-------------------------------WQAYHPVEWLFASTYHDVV--YP 198

Query: 242 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 301
           ++E+  +KA+ ++A+ A I K  + H+LRH++ATH L+ G  +  +Q QLGH  +K+T+ 
Sbjct: 199 LHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTER 258

Query: 302 YTH 304
           Y H
Sbjct: 259 YLH 261