Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  268 bits (684), Expect = 2e-76
 Identities = 142/320 (44%), Positives = 205/320 (64%), Gaps = 3/320 (0%)

Query: 1   MKSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQ 60
           +KS FL  +++ M+ R Y+ +T + YL+WI  +I+FH K+HP  MG +EV +FLT+LA Q
Sbjct: 3   LKSPFLSGLQQEMRMRGYSIRTEKTYLYWIKAFINFHGKRHPETMGTEEVAQFLTFLANQ 62

Query: 61  GKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP 120
             VA  TQ +ALN+L++LY++ L   L  ++ F  +  +R LP VL+  EI  +L  +D 
Sbjct: 63  RNVAINTQKIALNALAYLYQKHLHHELG-DLGFCYATKQRYLPTVLSPSEISLILNELDG 121

Query: 121 KHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQ 180
           + +L I+LLYGSGLR+ EC+RLR+QDID +  ++ +  GKG K+R   L+      L   
Sbjct: 122 RDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTY 181

Query: 181 IALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRH 240
           I  A +    D  Q    G  LP AL+ KYPNA  +  W ++FPS    ++P +  + RH
Sbjct: 182 IEKAIKIQQDDNQQGI--GPSLPNALERKYPNAFRQHGWMFIFPSTSTCINPYTGTLCRH 239

Query: 241 HMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ 300
           H++++V++KA+  + +   + K VTCHT RHSFATHLL+ G DIR+VQE LGH DV TTQ
Sbjct: 240 HLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQ 299

Query: 301 IYTHVLDRGASGVLSPLSRL 320
           IYTHVL +  +G  SPL  L
Sbjct: 300 IYTHVLGQHFAGTTSPLDTL 319