Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., integrase/recombinase XerD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  102 bits (255), Expect = 9e-27
 Identities = 84/277 (30%), Positives = 130/277 (46%), Gaps = 61/277 (22%)

Query: 45  MGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKT------PLSLEIRFQRSQL 98
           +G  +V  +L Y  V+ + A  + +  L+SL   Y  +L+T      P++   + +  +L
Sbjct: 53  VGQADVRAYLAY-RVEQQFARTSSARLLSSLRRFYNYLLQTKQISGDPMA---QIESPKL 108

Query: 99  ERKLPVVLTRDEIRRLL------EIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYG 152
            R LP  L+  ++ RLL      + V+ + +  ++LLY +GLR+ E + L ++ +    G
Sbjct: 109 SRHLPDSLSESQVDRLLAEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQG 168

Query: 153 AIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPN 212
            +RI  GKGGK R V +                             G    T ++    +
Sbjct: 169 LVRII-GKGGKERLVPM-----------------------------GEMAITEVEHYLTS 198

Query: 213 APYEFRWHYLFPSFQLSLDPESDVM----RRHHMNETVLQKAVRRSAQEAGIEKTVTCHT 268
           A +E   H            +SDV+    R   M        ++  A  AGIE  ++ HT
Sbjct: 199 ARHELLGHI-----------QSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHT 247

Query: 269 LRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
           LRH+FATHLL  GAD+R VQ  LGH+D+ TTQIYTHV
Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 284