Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., site-specific tyrosine recombinase XerD from Klebsiella michiganensis M5al

 Score =  102 bits (255), Expect = 9e-27
 Identities = 92/319 (28%), Positives = 143/319 (44%), Gaps = 56/319 (17%)

Query: 4   QFLLSVREFMQT----RYYAKKTIEAY---LHWITRYIHFHNKKHPSLMGDKEVEEFLTY 56
           Q L  + +F+      R  A+ T+ AY   L  +  ++H       S+ G+ +++  L  
Sbjct: 3   QDLARIEQFLDALWLERNLAENTLSAYRRDLTMVVEWLHHRGLSLASVSGE-DLQSLLAE 61

Query: 57  LAVQGKVATKTQSLALNSLSF---LYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRR 113
               G  AT T  L      F   LY+E ++ P          +L ++LP  L+  ++ R
Sbjct: 62  RQTGGYKATSTARLLSAVRRFFQHLYREKIR-PDDPSALLASPKLPQRLPKDLSEAQVER 120

Query: 114 LLEI------VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTV 167
           LL+       ++ + +  +++LY +GLR+ E + L + DI    G +R+  GKG K R V
Sbjct: 121 LLQAPLVEQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVI-GKGNKERLV 179

Query: 168 TLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQ 227
            L +E        +   + Y +       YG  WL   +               LFPS  
Sbjct: 180 PLGEEA-------VLWVENYLE-------YGRPWLLNGVASDV-----------LFPS-- 212

Query: 228 LSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIE-KTVTCHTLRHSFATHLLEVGADIRT 286
                     R   M        ++  A  AGI+ + ++ H LRH+FATHLL  GAD+R 
Sbjct: 213 ---------QRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRV 263

Query: 287 VQEQLGHTDVKTTQIYTHV 305
           VQ  LGH+D+ TTQIYTHV
Sbjct: 264 VQMLLGHSDLSTTQIYTHV 282