Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  104 bits (259), Expect = 3e-27
 Identities = 78/218 (35%), Positives = 108/218 (49%), Gaps = 45/218 (20%)

Query: 94  QRSQLERKLPVVLTRDEIRRLLEIVDPKHQLP------IKLLYGSGLRLMECMRLRVQDI 147
           +  +L R LP VLTRDE+  +L   D   +L       ++L+Y +GLR+ E   LR  D 
Sbjct: 94  ENPKLARNLPDVLTRDEMATILARPDLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDF 153

Query: 148 DFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALK 207
           D   G +R++ GKG K R V +      H+   +  A   Y RD         W P    
Sbjct: 154 DAQAGVVRVF-GKGAKERIVPVH-----HVSCALVTA---YLRD---------WRPAF-- 193

Query: 208 EKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCH 267
                +P E       P+  L+   +        ++   + K V+R   EAGI K ++ H
Sbjct: 194 -----SPVE-------PAMFLNRSGKG-------LSRQAVWKVVKRHVAEAGIHKDISPH 234

Query: 268 TLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
           T RHSFATHLLE GAD+R+VQ  LGH D+  T+IYTHV
Sbjct: 235 TFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHV 272