Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., recombinase XerD from Cupriavidus basilensis FW507-4G11

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 86/298 (28%), Positives = 125/298 (41%), Gaps = 48/298 (16%)

Query: 19  AKKTIEAY---LHWITRYIHFHNKKHPSLMGDKEVEEFLT--YLAVQGKVATKTQSLALN 73
           A+ TI+AY   L  ++R++H         + D  +  +    +LA +   A +  ++   
Sbjct: 30  AQNTIDAYRRDLALLSRWLHASGTCALLAVDDTALNGYFASRHLATRASSANRRLTVFKR 89

Query: 74  SLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQLPIK------ 127
              +  +E + T     +     Q  R  P  LT  ++  LLE  D    L ++      
Sbjct: 90  FFQWALREHMITADPCLLLRPAKQPPR-FPKTLTEAQVEALLETPDTATPLGLRDRTMLE 148

Query: 128 LLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRY 187
           L+Y SGLR+ E  +++  +I  + G  R+  GKG K R V    E               
Sbjct: 149 LMYASGLRVSELTQMKTIEISLNEGVARVVGGKGNKERLVPFGTE--------------- 193

Query: 188 YDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVL 247
                      G WL   L E  P    E     LF +            R   M     
Sbjct: 194 ----------AGDWLRRYLAEGRPALLGERACEALFVT-----------QRGEGMTRQAF 232

Query: 248 QKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
              ++R A+EA I   ++ HTLRH+FATHLL  GAD+R VQ  LGH D+ TTQIYTHV
Sbjct: 233 WHLIKRHAREAEIYAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHV 290