Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., integrase from Burkholderia phytofirmans PsJN

 Score =  141 bits (356), Expect = 2e-38
 Identities = 104/309 (33%), Positives = 148/309 (47%), Gaps = 40/309 (12%)

Query: 13  MQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLAL 72
           M+ R  A KT + YLH +  +  F  +  P     +++  +  YL   G  A      A+
Sbjct: 19  MRMRQLAPKTQDIYLHIVREFARFLGRS-PDTATVEDLRRYQLYLVDHGTSAVSLNH-AI 76

Query: 73  NSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIV-DPKHQLPIKLLYG 131
             L F +   L  P  L +R Q  ++ R LPVVL+ DE+RRL+E   + KHQ  + + YG
Sbjct: 77  TGLKFFFTVTLDRP-ELIVRMQPVRVPRILPVVLSPDEVRRLIEAAGNLKHQTALSVAYG 135

Query: 132 SGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRD 191
           +GLR  E + L+V D+D +   +RI QGKG ++R   L+  L   L+    +A+      
Sbjct: 136 AGLRASEVVALKVTDVDSERMTLRIEQGKGRRDRYAMLSPVLLERLRVWWRMARA----- 190

Query: 192 LHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAV 251
              K + G WL                    FP     LDP   +  R       L +A+
Sbjct: 191 -QGKMFDGGWL--------------------FPG----LDPLDQLSTRQ------LNRAI 219

Query: 252 RRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGAS 311
             +A+ A I+K V+ HTLRHSFATHLLE   DIR +Q  LGH  ++ T +Y  V      
Sbjct: 220 HAAAEAAHIDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLH 279

Query: 312 GVLSPLSRL 320
            V SPL RL
Sbjct: 280 EVTSPLDRL 288