Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella sp. ANA-3

 Score =  105 bits (263), Expect = 1e-27
 Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 61/277 (22%)

Query: 45  MGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKT------PLSLEIRFQRSQL 98
           +G  +V  +L Y  V+ + A  + +  L+SL   Y  +L+T      P++L    +  +L
Sbjct: 53  VGQADVRAYLAY-RVEQQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMAL---IESPKL 108

Query: 99  ERKLPVVLTRDEIRRLL------EIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYG 152
            R+LP  L+  ++ RLL      + V+ + +  ++LLY +GLR+ E + L ++ +    G
Sbjct: 109 SRQLPDSLSESQVDRLLAEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQG 168

Query: 153 AIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPN 212
            +RI  GKGGK R V + +     ++  ++ A+                           
Sbjct: 169 LVRI-VGKGGKERLVPMGELAITEVERYLSFAR--------------------------- 200

Query: 213 APYEFRWHYLFPSFQLSLDPESDVM----RRHHMNETVLQKAVRRSAQEAGIEKTVTCHT 268
                        ++L  + +SDV+    R   M        ++  A  AGIE  ++ HT
Sbjct: 201 -------------YELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGIETELSPHT 247

Query: 269 LRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
           LRH+FATHLL  GAD+R VQ  LGH+D+ TTQIYTHV
Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 284