Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., transposase, IS4 family protein (RefSeq) from Shewanella loihica PV-4

 Score =  571 bits (1472), Expect = e-168
 Identities = 277/325 (85%), Positives = 301/325 (92%)

Query: 1   MSHQLTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETM 60
           MS QLTFAD EFS+KRRQTRKE+FL+RME LLPWSQLL VIEPFYPK GNGRRPYPLETM
Sbjct: 1   MSQQLTFADSEFSSKRRQTRKEIFLSRMENLLPWSQLLDVIEPFYPKVGNGRRPYPLETM 60

Query: 61  FRIHCMQQWYSLSDEAMEDALYEIASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRS 120
           FRIHCMQQWYSLSDEA EDALYEIASMR FA LSLD+AIPDRTTIMNFRHLLE+H+L R 
Sbjct: 61  FRIHCMQQWYSLSDEATEDALYEIASMRQFALLSLDKAIPDRTTIMNFRHLLEKHKLTRK 120

Query: 121 VFEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAH 180
           +F+ +NQWLS+ GV+M QGTLVDATIIEAPSSTKNK N+RDP+MHQTKKGN+WHFGMKA+
Sbjct: 121 LFKTVNQWLSDSGVMMTQGTLVDATIIEAPSSTKNKNNERDPDMHQTKKGNQWHFGMKAY 180

Query: 181 IGVDAKSGLTHTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWL 240
           IGVDAKSGLTHTLVTTAANEHDLNQL NLLHG+EEFVSGDAGYQGA KR+ELK  +V+WL
Sbjct: 181 IGVDAKSGLTHTLVTTAANEHDLNQLDNLLHGEEEFVSGDAGYQGAQKREELKDTNVEWL 240

Query: 241 IAERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND 300
           IAERPGK+RALKK PRKNK  I+IEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND
Sbjct: 241 IAERPGKIRALKKRPRKNKTIINIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND 300

Query: 301 NQLAMLFTLANLVKVDQLIRRQARS 325
           +QLAMLFTLANL  VDQ++RRQ RS
Sbjct: 301 SQLAMLFTLANLFTVDQMLRRQPRS 325