Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., IS4 family transposase (RefSeq) from Shewanella sp. ANA-3

 Score =  542 bits (1396), Expect = e-159
 Identities = 260/325 (80%), Positives = 288/325 (88%)

Query: 1   MSHQLTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETM 60
           M HQLTFAD EFS+KRRQTRKE+FL+RM+ +LPW++LLAVIEP YPKAGNGRRPYPLETM
Sbjct: 1   MEHQLTFADSEFSSKRRQTRKEIFLSRMDAILPWAKLLAVIEPVYPKAGNGRRPYPLETM 60

Query: 61  FRIHCMQQWYSLSDEAMEDALYEIASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRS 120
            RIHCMQ WY+LSD AMEDA YEIASMRLFAHLSLD A+PDRTTIMNFRHLLEQH+L R 
Sbjct: 61  VRIHCMQHWYNLSDGAMEDAFYEIASMRLFAHLSLDSAMPDRTTIMNFRHLLEQHKLARK 120

Query: 121 VFEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAH 180
           +   INQWLSE GV+M QGTLVDATIIEAPSSTKNK NQRD +MHQTKKGN+WHFGMK H
Sbjct: 121 ILSTINQWLSECGVMMTQGTLVDATIIEAPSSTKNKQNQRDGDMHQTKKGNQWHFGMKVH 180

Query: 181 IGVDAKSGLTHTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWL 240
           IGVDAKSGLTH+LVTT+ANEHDLNQL NLLHG+E+FVS DAGYQGA KR  L    VDWL
Sbjct: 181 IGVDAKSGLTHSLVTTSANEHDLNQLENLLHGEEQFVSADAGYQGAEKRKVLADKKVDWL 240

Query: 241 IAERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND 300
           IAERPGKVR LK+HPR NKV I  EYLKASIRAKVEHPFRIIKCQFGF+KARYKGL+KND
Sbjct: 241 IAERPGKVRTLKQHPRLNKVLIRTEYLKASIRAKVEHPFRIIKCQFGFVKARYKGLVKND 300

Query: 301 NQLAMLFTLANLVKVDQLIRRQARS 325
           N LAMLF LAN+V+VDQ++R + ++
Sbjct: 301 NHLAMLFALANIVRVDQMLRYEPKT 325