Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Phage integrase from Pseudomonas fluorescens FW300-N2E2

 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 84/363 (23%), Positives = 141/363 (38%), Gaps = 33/363 (9%)

Query: 29  GLGVRVSPKGKITWV--YRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDPR 86
           GL +RV   G + W   YR  +      + LG YP + L +A +      EL+ LG DP+
Sbjct: 30  GLQLRVRASGSMMWNFNYREPLTRSRINMALGPYPDLSLANARKKAVEARELLALGIDPK 89

Query: 87  KSTRSANDDSII----TLNDLIDYWAENHARDNIKQC--DALLKMFHTDITPTLGNYPAK 140
                     +     T   +   W E   +D++ +   + + +     + P++   P  
Sbjct: 90  AQRDEVRHAKLAETEHTFEKVATAWFELK-KDSVTKAYGEDIWRSLTLHVLPSMKTTPLS 148

Query: 141 QLELIDFMPVFLKAKRRVSAKHSANLMTRFKQ----VLSYAVRHGLLKYNVLTELKKADV 196
           Q+      P+ +K  R + AK S   + R  Q    +++Y V  GL+  N L  ++ A  
Sbjct: 149 QITA----PMVIKILRPIEAKGSLETVKRLSQRLNEIMTYGVNSGLIFANPLNGIR-AVF 203

Query: 197 GVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSNELRLAKKADFDLE 256
             P     +    + +  L   I + SI  + +  +   L    R  E    + AD D  
Sbjct: 204 KKPKKENMAALPPEELPELMMEIANASIKRTTRCLIEWQLHTMTRPAEAATTRWADIDFN 263

Query: 257 KRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNHTMMFPPVNTEQDRPMSA 316
           KR+WT+P E  K R+         IP   + + + +       T+     N E   P   
Sbjct: 264 KRIWTIPPERMKKRRP------HTIPLTDQALALLE-------TLKQLSGNREYVFPSDR 310

Query: 317 NVPVDFGSKLAD-RIEELGF-PRTTNHDMRRTARNIWESMGVPYHVAETMLGHKVHTGVQ 374
           N      S+ A+  ++ +GF  R  +H +R  A  I    G    + E  L H     V+
Sbjct: 311 NPRTHANSQTANMALKRMGFQDRLVSHGLRSMASTILNEHGWDPELIEVALAHVDKDEVR 370

Query: 375 SHY 377
           S Y
Sbjct: 371 SAY 373