Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., Integrase from Pseudomonas fluorescens FW300-N2E2

 Score = 70.1 bits (170), Expect = 1e-16
 Identities = 83/379 (21%), Positives = 145/379 (38%), Gaps = 45/379 (11%)

Query: 29  GLGVRVSPKGKITWVYR-ANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDPRK 87
           GL + V   G   W ++    +GK      G YPA+ L+ A   R    EL+  G DP +
Sbjct: 30  GLFLLVRATGTKVWRFKYKKPSGKPGLATFGNYPALGLKAARARRADALELLAHGQDPIE 89

Query: 88  STRSANDDSIITLNDLIDY------------WAENHARDNIKQCDALLKMFHTDITPTLG 135
           S + A  ++     +  +             W+++HA         +LK    D+ P LG
Sbjct: 90  SAKQAKIEAANEAGNTFEALALEWHASMAGKWSKDHAV-------RVLKEIEVDLFPMLG 142

Query: 136 NYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKAD 195
             P   L+  D +      ++R +      L  R   ++  AV+   + YN   +L    
Sbjct: 143 KRPVSDLKTRDLLACLKTVEKRGALDVVGRLRQRIAGIMRIAVQRNFIVYNPALDL---- 198

Query: 196 VGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNF---LRLMLIFANRSNELRLAKKAD 252
           VG   T K   +    ++ L + +               + L L+   RS+ELR A+ ++
Sbjct: 199 VGGTATRKTKHRPALPLERLPELLQRCEADTGRPLTCLAVSLALLVFIRSSELRFARWSE 258

Query: 253 FDLEKRVWTVPEENNKVR--KKQGGAIRRAIP---PLAEKI--IMEQFAIWPNHTMMFPP 305
           FD  + +WT+P E   +   K+     +   P   PL+ +   ++EQ         +  P
Sbjct: 259 FDFTRSMWTIPGERAPIEGVKRSHRGAKMGTPHLVPLSRQTLEVLEQIRRLSGRFDLVLP 318

Query: 306 VNTEQDRPMSANVPVDFGSKLADRIEELGFP---RTTNHDMRRTARNIWESMGV-PYHVA 361
            +    RPMS N        +   +  +G+        H  R  A +     G+      
Sbjct: 319 GDHYYWRPMSENT-------VNKSLRRMGYDTKIEVCGHGFRTMACSALVESGLWSRDAV 371

Query: 362 ETMLGHKVHTGVQSHYLGK 380
           E  + H+   GV++ Y+ K
Sbjct: 372 ERQMSHQERNGVRAAYIHK 390