Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score = 97.1 bits (240), Expect = 8e-25
 Identities = 89/377 (23%), Positives = 163/377 (43%), Gaps = 25/377 (6%)

Query: 10  LRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAI 69
           L+  +  P      ++   GL + +   G  +W +R  ++GK   I LG    + L  A 
Sbjct: 6   LQVKSAAPRKSDYGLADGGGLFLWIRAAGGKSWRFRFRLDGKQSHISLGTIDKVTLAQAR 65

Query: 70  QARESRAELVELGFDP---RKSTRS-ANDDSIITLNDLIDYWAENHA-RDNIKQCDALLK 124
           Q      +LV  G  P   RK  R+ A      T   L   W ++ A R ++     +++
Sbjct: 66  QLASDARQLVAQGRHPGLERKVMRAQAAMSRANTFKSLALEWHQHKAPRWSVGYAGDVVE 125

Query: 125 MFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLK 184
            F  D+ P +G+ P   ++ + ++ VF + + R + +    +  R ++V  +A+  G  +
Sbjct: 126 AFELDVFPQVGSLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVYRFAIATGRAE 185

Query: 185 YNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSNE 244
           YN + ++  A +  PT+          + AL ++I     H+  K   RL+++   R+ E
Sbjct: 186 YNPIADIGGA-LQTPTSRHYPFLPIAEIPALIRSIQACPGHDVVKIATRLLILTGVRTAE 244

Query: 245 LRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEK---IIMEQFAIWPNHTM 301
           LR    ++FDL+K +W +P    K+R       R  + PL+++   ++ E   I   +T+
Sbjct: 245 LRGVPWSEFDLDKALWLIPAARMKMR-------RAHLVPLSQQAVAVLRELERITGGYTL 297

Query: 302 MFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFP-RTTNHDMRRTARNIWESMGVPYHV 360
            FP  N +  +PMS        + +   ++  G+  R T H  R T        G P   
Sbjct: 298 AFPGRN-DPAKPMSE-------AAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYPSEW 349

Query: 361 AETMLGHKVHTGVQSHY 377
            ET L H     ++  Y
Sbjct: 350 VETQLAHVDKNSIRGTY 366