Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 22/283 (7%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMK 64
           +TDA +++   KP     ++S   GL + V P G   W ++  + GK     +G +P + 
Sbjct: 6   LTDAKVKSV--KPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVS 63

Query: 65  LRDAIQARESRAELVELGFDP---RKSTRSANDDSIITLNDLID---------YWAE--- 109
           L +A  ARE    LV+ G  P   R+  +  N +++       +         Y AE   
Sbjct: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKP 123

Query: 110 NHARDNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTR 169
             A  + +  ++ ++ +   ++P     P   + +    P+  + K    A  + ++   
Sbjct: 124 VFAHSSYRTKESRIRKY---LSPKFDGMPMSDIGVKQIRPLLEECKAH-GAWAAIHVKGD 179

Query: 170 FKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNK 229
              +  +AV  GL++ N +  L+   + VP +  ++    + ++  ++A+     +    
Sbjct: 180 LSAIFEFAVVRGLVEANPIPSLRGL-LRVPASESKAAMTREQIQKFYQALRGYRGYPETA 238

Query: 230 NFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKK 272
             LRL+ + A R  E   A+  +FD E  VW  P    K R++
Sbjct: 239 LCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARRE 281