Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 89/367 (24%), Positives = 141/367 (38%), Gaps = 46/367 (12%)

Query: 29  GLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDPRKS 88
           GL +     G   W+ R N++G+ + + LG    + L++A +A E    LV  G DP K 
Sbjct: 26  GLWLHKREDGGAQWILRVNVHGRRREMGLGSVSEVSLKEAREAAERWRSLVRGGLDPIKE 85

Query: 89  TRSANDDSIITLNDLIDYWAENHARDNIKQCDALLK----------MFHTDITPTLGNYP 138
            +    ++   L+ L D      ARD  +   A LK               + P LG  P
Sbjct: 86  RQRQRREAARNLHCLDDI-----ARDAFESRKAELKGDGVAGRWFSPLEIHVLPRLGKVP 140

Query: 139 AKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGV 198
              ++  D   V L       A+ +   + R    L +A   GL      T+  +A +G 
Sbjct: 141 VVDIDQTDIRDV-LAPIWHSKAETARKALNRLAICLKHAAALGLSVDLQATDKARALLG- 198

Query: 199 PTTPKRSRQDEQGVKAL-WKAID----DISIHESNKNFLRLMLIFANRSNELRLAKKADF 253
                + R   + + A+ W+ +      +S        LRL+++   RS  LR  ++   
Sbjct: 199 -----KQRHKPENIPAMPWRDVPIFYASLSDGTVTHLALRLLILTGVRSAPLRFLREEQI 253

Query: 254 DLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNHTMMFPPV--NTEQD 311
           + +  VWT+P E  K R+      R  +   A ++I EQ         +FP V      D
Sbjct: 254 NGD--VWTIPGEAMKGRRGATADFRVPLSDAALEVI-EQARRHAREGFLFPSVKKGVISD 310

Query: 312 RPMSANVPVDFGSKLADRIEELGFPRTTNHDMRRTARN-IWESMGVPYHVAETMLGHKVH 370
             MS             R+ E        H  R + R+ I E     + VAET LGH + 
Sbjct: 311 ATMS-------------RLMERAGMAARPHGFRSSLRDWIAEVTEASHDVAETTLGHIIG 357

Query: 371 TGVQSHY 377
             V+  Y
Sbjct: 358 GAVERAY 364