Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 90.1 bits (222), Expect = 1e-22
 Identities = 87/368 (23%), Positives = 148/368 (40%), Gaps = 29/368 (7%)

Query: 30  LGVRVSPKGKITWVYRANINGKMQRIKLGEYP----AMKLRDAIQARESRAELVELGFDP 85
           L ++    G  +++YR  + GK   I LG++      M   DA          V+ G +P
Sbjct: 24  LYIKPLKSGVGSFIYRGTVAGKRIEIVLGQFGNGPGKMSKSDAKNQVAELQRQVKEGKNP 83

Query: 86  RKSTRSANDDSIITLNDLIDYWAENHARDNIKQCDALLKMFHTDITPTLGNYPAKQLELI 145
           +   +        T   +   + E + R  I        ++   +  TLG  P   +  I
Sbjct: 84  KLEIKKLAAALQDTFGSVTQDYFEGYCR-TIDHPGRPRALYTNYVAKTLGELPVSYITRI 142

Query: 146 DFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRS 205
               +       V    + N++    ++L +AV  G+L+ NV   + +  +G    P+  
Sbjct: 143 MVRDLVNSIDAGVKRTANINVLRLIDKILDHAVELGMLETNVAKGINRKKIGAKAEPRER 202

Query: 206 RQDEQGVKALWKAIDDISIHESNKNFLR--LMLIFANRSNELRLAKKADFDLEKRVWTVP 263
               + +  +   + D   H S  N+L   L+LI   R NEL  AK  +FDLEK++W +P
Sbjct: 203 NLSFEEIPIVLAILRD---HVSRDNYLAFILLLILGVRKNELLQAKWTEFDLEKQIWLLP 259

Query: 264 EENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVD-- 321
              +K +K    +I  AIP     I++E      +   +FP      + P +    ++  
Sbjct: 260 NGRSKTKK----SIAIAIPEPLMPILLEVKERSGSSDYLFPARRNGSNVPHTGKDTLNTA 315

Query: 322 ----FGSK--------LADRIEELGFPRTTNHDMRRTARNIWESMGVPYHVAETMLGHKV 369
               FG +        L +  E  G P  T HD+RRT  +    + VP  + E +L H  
Sbjct: 316 LSKLFGKENKGKKSRPLPNIFEAAGIPHFTVHDLRRTCSSRLSELSVPDEIIEKILNH-T 374

Query: 370 HTGVQSHY 377
             GV+  Y
Sbjct: 375 KAGVRGTY 382