Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score = 65.5 bits (158), Expect = 3e-15
 Identities = 85/381 (22%), Positives = 154/381 (40%), Gaps = 20/381 (5%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEY--PA 62
           +TD  LR  N KP     +++ R GL V V+  G I++ Y   I+G+ + I  G Y    
Sbjct: 2   LTDTKLR--NLKPRDKLYKVNDRDGLYVAVTVSGSISFRYNYAIHGRQETITFGRYGVGG 59

Query: 63  MKLRDAIQARESRAELVELGFDPRKSTRSANDDSIITLNDLIDYWAENHARD---NIKQC 119
           + L +A +      +++  G  P K    A D + +   +    WAE   R         
Sbjct: 60  ITLAEARERLGEAKKMIAAGKSPAK--EKARDKARVKDAETFGAWAEKWLRGYQMAESTR 117

Query: 120 DALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVR 179
           D    ++  ++    GN    ++   D   +      R +   + ++     QV  +A+ 
Sbjct: 118 DMRRSIYFRELKSKFGNQKLVEITHEDLRALTDAIVERGAPATAVHVREVVFQVYRWAIE 177

Query: 180 HGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFA 239
            G  K     EL +        P+        +  +++ ++ +    S +   +L+L+  
Sbjct: 178 RG-QKVENPAELVRPTTIARFEPRDRALTPDEIGLMYQYVERVGTAPSFRAAAKLLLLTM 236

Query: 240 NRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNH 299
            R +EL  A  ++ +  + +WT+P+E  K R      + R    L   I ++ FA   ++
Sbjct: 237 VRKSELTKATWSEVNFSEALWTIPKERMKRRNPHLVFLSR--QALDIFIALKTFAGGSDY 294

Query: 300 TMMFPPVNTEQDRPMSA---NVPVDFGSKLADRIEELGFPRTTNHDMRRTARNIWESMGV 356
            +   P   + D PMS+   N  +    KLA + E     +   HD+RRTA  +    G 
Sbjct: 295 VL---PSRYDSDAPMSSATLNQVLTLTYKLAQK-EGKPLAKFGPHDLRRTASTLLHEAGY 350

Query: 357 PYHVAETMLGHKVHTGVQSHY 377
                E  L H+   GV++ Y
Sbjct: 351 NTDWIEKCLAHE-QRGVRAVY 370