Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 84/378 (22%), Positives = 141/378 (37%), Gaps = 33/378 (8%)

Query: 14  NGKPYSGKTEISHRFGLGVRVSPKGKITWVYRAN--INGKMQRIKLGEYPAMKLRDAIQA 71
           N KP      +S   GL +RV   G   W Y     +  K   I +G YP + L  A + 
Sbjct: 15  NQKPGPKDIVLSDGGGLQLRVRTNGSKLWNYNYYHPVTKKRVNIGIGPYPDIPLAKAREI 74

Query: 72  RESRAELVELGFDPRKSTRSAN----DDSIITLNDLIDYWAENHARDNIKQCDALL-KMF 126
                +LV  G DP+      +     + + TL ++   W E    +  K   A      
Sbjct: 75  ALEYRQLVACGVDPKSKREQESLKLKQEVLYTLKNVAAEWLEIKKSEVTKSHAAKTWSSL 134

Query: 127 HTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQ----VLSYAVRHGL 182
            + + P LG+ P  ++      P+ +K  R + AK S   + R  Q    ++++ V  G 
Sbjct: 135 ESHVFPELGDTPLNKITA----PLVIKVFRPIEAKGSLETIKRLSQRLNEIMNFGVNCGY 190

Query: 183 LKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFANRS 242
           +  N L  ++ A    P     +      +  L + +   SI    +  +   L    R 
Sbjct: 191 IDSNPLVGIRAA-FKKPKKESMATLTPSELPLLMRHLSQASIKRVTRCLIEWQLHTMTRP 249

Query: 243 NELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWP---NH 299
           +E   A+  + DL+   WT+P E  K R       R  + PL ++++    AI P   + 
Sbjct: 250 SEAATARWDELDLDNLTWTIPAEKMKRR-------REHVIPLTQQMLGILDAIKPISGHR 302

Query: 300 TMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTNHDMRRTARNIWESMGVPYH 359
             +FP      DR   ++      +    R+   G  +  +H MR  A       G    
Sbjct: 303 DYIFP-----ADRDPKSHCNTQTANVALKRMGLKG--KLVSHGMRALASTTLNEQGFESD 355

Query: 360 VAETMLGHKVHTGVQSHY 377
           + E  L H     V++ Y
Sbjct: 356 LIEAALSHVDANQVRAAY 373