Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 77.8 bits (190), Expect = 4e-19
 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 11/247 (4%)

Query: 29  GLGVRVSPKGKITWVYRANINGKMQRIKL--GEYPAMKLRDAIQARESRAELVELGFDPR 86
           GL +RV   G  +W  R ++NGK + + L  G+YP M L DA  A     + +  G DP 
Sbjct: 23  GLYIRVQTAGIASWEIRYSVNGKRRFMTLEGGQYPHMSLADARAAAAIARQSIIKGSDPL 82

Query: 87  KSTRSANDDSIITLNDLIDYWAENHARDNIKQCDALLKMFHTDITPTLGNYPAKQLELID 146
                 +++ I T++DL D W  + A+  +K  +  L+++  ++ P +G    K +  +D
Sbjct: 83  AERAKLSEEKIHTVDDLFDDWFVD-AKKQLKHSEIPLRIYTKEVKPYIGRLQIKDVTPLD 141

Query: 147 FMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSR 206
              +  K         + + +   K++ ++A + GL   N  +  K AD G     ++SR
Sbjct: 142 IRNIIQKVAHSNRPCIANDTLLHCKKLFAHACKLGLKDGNPASHFKPADAG---GAEKSR 198

Query: 207 QDEQGVKALWKAIDDI-----SIHESNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWT 261
           +    VK L    D       S    N     L++    R  EL      + +L  ++W 
Sbjct: 199 ERALSVKELEFFFDVARKNISSFGRDNYLAAALLVSLGIRKGELFKLTWREVNLNLKIWK 258

Query: 262 VPEENNK 268
           +P+   K
Sbjct: 259 LPQPRTK 265