Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (323), Expect = 2e-34
 Identities = 113/390 (28%), Positives = 186/390 (47%), Gaps = 25/390 (6%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           MA++D+WL+A   K      E + R GL VRVS KG IT+  R        R+ +G YP 
Sbjct: 1   MALSDSWLKANLNKVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAARVDIGPYPL 60

Query: 63  MKLRDAIQARESRAELVELGFDPRKSTRSANDDSII---TLNDLIDYWAENH---ARDNI 116
           + L++A +  E+  +L+    DPR+  R     ++    ++  +   W ++     R ++
Sbjct: 61  LSLKEAREQCEAYRKLLLDNQDPREYKRDKAAKAVSNEGSVEQVFRAWHKSQFSDGRASV 120

Query: 117 KQCDA--LLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHS--ANL-MTRFK 171
           K   A   L+    ++ P LG     Q+ L  ++ +F      ++AK     NL +T  +
Sbjct: 121 KDSTAHEYLRALEINVFPVLGKKQVDQVTLHQWLDLF----ESIAAKKPTITNLTLTVSR 176

Query: 172 QVLSYAVRHGLLKYNVLTELK-KADVGVPTTPKRSRQDEQGVKALWKAIDDISIHE-SNK 229
           + L +AVR  ++  N L  ++ K D+ +    ++    +  +K + +AID+       N+
Sbjct: 177 RALKWAVRRRIISTNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNR 236

Query: 230 NFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKII 289
             + + L F  R  ELRLA+KA FD  K +WTVP EN+K   K    + R I      ++
Sbjct: 237 IMVFMALFFGCRIGELRLAQKAHFDFTKMIWTVPVENHKTGYKMQRPLLRPIIDEIVPLL 296

Query: 290 MEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTT--NHDMRRTA 347
              F++ PN  ++FP   TE+    S        + +    +  G P      HD+RRT 
Sbjct: 297 ELAFSLSPNE-LVFP---TEKGGIYSQAATTRMSNPINTWAKLNGTPLNEWYLHDLRRTQ 352

Query: 348 RNIWESMGVPYHVAETMLGHKVHTGVQSHY 377
           R     +     VAETMLGHK+ +G+QS Y
Sbjct: 353 RTNMSKI-TTTEVAETMLGHKL-SGIQSIY 380