Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.3 bits (207), Expect = 6e-21
 Identities = 93/378 (24%), Positives = 155/378 (41%), Gaps = 37/378 (9%)

Query: 16  KPYSGKTEISHRFGLGVRVSPKGKITWV--YRANINGKMQRIKLGEYPAMKLRDAIQARE 73
           KP   +  ++   GL +R+ P G   W+  Y   I  K Q + LG YP + L  A +  +
Sbjct: 17  KPKDKEYNLADGGGLQIRIKPNGSKLWLLNYSHPITKKRQNLSLGTYPDISLLSARKLAQ 76

Query: 74  SRAELVELGFDPR--KSTRSANDDSII--TLNDLIDYWAENHARDNIKQ--CDALLKMFH 127
               L+  G DP+  +  + A   +II  T   +   W E   +D + +    A  + F 
Sbjct: 77  EARTLLAHGTDPKAHREAQIAAKAAIIEHTFGKIAAEWFERK-KDEVTEDHAAATWRSFK 135

Query: 128 TDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSAN----LMTRFKQVLSYAVRHGLL 183
             + P+L + P  Q+      P+ ++  R + AK +      L  R  +V+ YAV  GL+
Sbjct: 136 LHLLPSLKDIPISQITA----PMVIEFLRPIEAKGNLETVKRLTQRLNEVMIYAVNTGLI 191

Query: 184 KYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSN 243
             N L+ +K A    P     +      +  L +AI + SI +  +  +   L    R N
Sbjct: 192 HANPLSGIK-AIFKKPRKEHLAALKPDELPELMQAIANASIKKVTRFLIEWQLHTMTRPN 250

Query: 244 ELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWP---NHT 300
           E   A+  + + ++R+W +P    K+R+           PL E+ +    AI P   +  
Sbjct: 251 EAAAARWDEINFDERIWLIPAARMKMRRDHQ-------IPLTEQTLALLAAIKPISGHRE 303

Query: 301 MMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGF-PRTTNHDMRRTARNIWESMGVPYH 359
            +FP    ++D    +NV     +     ++ +G   RTT H  R  A       G    
Sbjct: 304 YIFP---ADRDPKTHSNVQTANAA-----LKRMGLKDRTTAHGFRSLASTTLNEQGFDPD 355

Query: 360 VAETMLGHKVHTGVQSHY 377
           V E  L H     V+S Y
Sbjct: 356 VIEAALAHTDKNQVRSAY 373