Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  114 bits (284), Expect = 7e-30
 Identities = 104/408 (25%), Positives = 180/408 (44%), Gaps = 41/408 (10%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSP----KGK-ITWVYRANINGK---MQRIK 56
           +T+  L +   KP    T +S   GL  R +P    KG  + W++R  + G+    + I 
Sbjct: 7   MTNTALVSLTNKPLDKPTTLSDSGGLAARATPAKDGKGNNVLWIFRYRMGGRETPQRTIV 66

Query: 57  LGEYPAMKLRDAIQARESRAELVELGFDPRKSTRSANDDSI--ITLNDLIDYWAENHARD 114
            G+YP +KL  A + RE     +  G DP+         ++  +T+ +++D W   +A  
Sbjct: 67  FGKYPDLKLAGAREKRERCKVWIADGKDPKTQLELELSKAVKPLTVAEVLDNWISEYANG 126

Query: 115 NIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKH---SANLMTRFK 171
                    + F   I P LG+ P  +++     P ++ A ++ S K+   +  ++   +
Sbjct: 127 KRVNASKHKQQFERWIVPHLGSLPLAEIK----KPHWIAALKKRSQKYPVAAGYVLRNLQ 182

Query: 172 QVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSR---QDE--QGVKALWKAIDDISIHE 226
           Q L +  + G      + ++   D+G     KRS+   +D+  Q +  L K I+   +  
Sbjct: 183 QALKWCAKSGHEFDRSVFDIDLDDIGAKHQAKRSQRLVEDDSWQRLIDLLKWIEAGEMLP 242

Query: 227 SNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKK-----QGGAIRRAI 281
             KN L L++ F  R+ ELRLA   +F+ E  VWTVP E+NK + K       G I+R I
Sbjct: 243 YYKNLLILLITFGARTQELRLATTKEFNFETGVWTVPAEHNKTQAKDQARGDSGEIKRPI 302

Query: 282 PPLAEKIIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTNH 341
           P   + +++          ++              N+    G +   R+          H
Sbjct: 303 PDSIKPLLVALCEANKGGYLLGEFKEPTAVSAWGGNIWKKLGHEQKWRL----------H 352

Query: 342 DMRRTARNIWESMGVPYHVAETMLGHKVH--TGV--QSHYLGKMRLSL 385
           D+RRT       +GV  HV E++LGH +    G+  +SHYL + R +L
Sbjct: 353 DLRRTVATGLNDLGVAPHVVESLLGHSIQGVAGIYNRSHYLPEKRQAL 400