Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., putative site specific integrase from Klebsiella michiganensis M5al

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 89/375 (23%), Positives = 162/375 (43%), Gaps = 29/375 (7%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           M + D  +R    KP +    +    GL + + P G  +W +R    GK + I LG YP 
Sbjct: 1   MPLNDMQIR--RAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPT 58

Query: 63  MKLRDAIQARESRAELVELGFDP---RKSTRSA-NDDSIITLNDLIDYWAE-NHARDNIK 117
           + L DA   R+   +LV  G +P   RK  + A   +S      +   W +   A+ +  
Sbjct: 59  ITLADARSRRDDARKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSAKWSAG 118

Query: 118 QCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYA 177
               +++ F  DI P +G  P  +++ ++ + V  K ++R + +    +  R  +V  YA
Sbjct: 119 YASDIMEAFQNDIFPYVGTRPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYA 178

Query: 178 VRHGLLKYNVLTELKKA-DVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLML 236
           +  G  ++N   +L  A +V         + DE  +    +A+   +     +   +L++
Sbjct: 179 IATGRAEFNPAADLSSALEVHQSNHFPFLKADE--LPDFLRALHSYTGSRLVQIATKLLM 236

Query: 237 IFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEK---IIMEQF 293
           I   R+ ELR A  ++FDL+  +W +P E  K+R       R  + PL+ +   ++ E  
Sbjct: 237 ITGVRTIELRAALWSEFDLDNAIWEIPAERMKMR-------RSHLVPLSTQALDLLNELK 289

Query: 294 AIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGF-PRTTNHDMRRTARNIWE 352
            +  N+  +FP  N + ++PMS        + +   I+ +G+  + T H  R T   I  
Sbjct: 290 MMTGNYRYVFPGRN-DPNKPMSE-------ASINQVIKRIGYGGKVTGHGFRHTMSTILH 341

Query: 353 SMGVPYHVAETMLGH 367
                    E  L H
Sbjct: 342 DQNYNSAWIEIQLAH 356