Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., prophage P4 integrase from Klebsiella michiganensis M5al

 Score = 87.8 bits (216), Expect = 5e-22
 Identities = 93/402 (23%), Positives = 174/402 (43%), Gaps = 33/402 (8%)

Query: 3   MAITDAW----LRATNGKPYSGK-----TEISHRFGLGVRVSPKGKITWVYRANINGKMQ 53
           M +TDA+    LR  N +  SG+     + +S   GL + +   G   W  R   NG+ +
Sbjct: 1   MFLTDAYIKKQLRELNARKLSGEIIEKDSRLSDGSGLYLLIKSNGSAYWRLRYRFNGEDR 60

Query: 54  RIKLGEYPAMKLRDAIQARESRAELVELGFDPRKSTRSANDDSIITLNDLIDYWAENHAR 113
            I LGEY  + L  A + RE     +  G DPR    + +++  +T  ++   W  ++ +
Sbjct: 61  LISLGEYKYIPLALAREKREEVKRNIARGIDPR---GTKDEEGFLTFREVAMQWHASNRQ 117

Query: 114 DNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQV 173
            + +    +LK    ++ P  G+   K L+  D +    + +     + ++ +  R   V
Sbjct: 118 WSKEHSRRILKSLLDEVFPVFGDDNIKLLKTQDLLKPVKQVQDSGRLELASRIYQRINSV 177

Query: 174 LSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLR 233
           ++ AV +GLL++N +   K   +    +  R+  + + +    K I+        +  + 
Sbjct: 178 MTLAVDNGLLEFNPIAH-KSGALIKRNSEHRAALELENIPEFLKRIEKFKGRRLTQLAMT 236

Query: 234 LMLIFANRSNELRLAKKADFDLEKRVWTVP---EENNKVRKKQGGAIRRA--IPPLAEK- 287
            +L    RS+ELR A+  +FDLE  +WT+P   EE   V+    G+  +   I PL+ + 
Sbjct: 237 FLLHTFVRSSELRFARWKEFDLENSLWTIPSVREEIPGVKYSYRGSKMKTPHIVPLSHQA 296

Query: 288 --IIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPR---TTNHD 342
             II E  +I      +F   +  + +PMS N        +   ++ +G+       +H 
Sbjct: 297 CSIIQEIKSITGERIFVFTSDHFPK-KPMSENT-------INHALQSMGYDTKKDLCSHG 348

Query: 343 MRRTARN-IWESMGVPYHVAETMLGHKVHTGVQSHYLGKMRL 383
            R  A + + ES        E  + H+    V++ Y+ K  L
Sbjct: 349 FRTMACSALIESGKWSRDAIERQMSHQERNNVRAAYIHKAEL 390