Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., Prophage integrase IntA from Enterobacter sp. TBS_079

 Score = 94.0 bits (232), Expect = 7e-24
 Identities = 77/325 (23%), Positives = 146/325 (44%), Gaps = 13/325 (4%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           MA++D  +R+   KP +   +++   G+ + V P G   W  R    GK + + LG+YP 
Sbjct: 1   MALSDVKVRSA--KPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPE 58

Query: 63  MKLRDAIQARESRAELVELGFDP---RKSTRSANDDSIITLNDLIDYWAENHARDNIKQC 119
           + L DA   R+   +L+  G DP   +K+ +   +   IT   +   W  ++ + +    
Sbjct: 59  VSLADARARRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSTSHS 118

Query: 120 DALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVR 179
             +LK    ++  ++G    K +   D +      ++    + +A L  R   ++ +AV+
Sbjct: 119 ARVLKSLEDNLFASVGKRNIKDIGTRDLLVPIKAVEKSGRLEVAARLQQRTTAIMRFAVQ 178

Query: 180 HGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFA 239
           +GL+ YN   E+  A +       R+  D   +  L   ID+ +     +  + L L+  
Sbjct: 179 NGLIDYNPAQEIAGA-IATAKRKHRAALDLNRIPELLHRIDNYTGRPLTRLAVDLTLLVF 237

Query: 240 NRSNELRLAKKADFDLEKRVWTVPEENNK---VRKKQGGAIRRA--IPPLAEK--IIMEQ 292
            RS+ELR A+  + D E  +WT+P E      V+  Q G+  R   + PL+ +   I+E+
Sbjct: 238 IRSSELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEK 297

Query: 293 FAIWPNHTMMFPPVNTEQDRPMSAN 317
                 +  +    + +  +PMS N
Sbjct: 298 IKSMNGNRELIFVGDHDPRKPMSEN 322