Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Prophage integrase IntS from Enterobacter sp. TBS_079

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 90/395 (22%), Positives = 174/395 (44%), Gaps = 31/395 (7%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           MA+TDA +RA   KP     +++    + + V P G   W  R    GK + + LG YP 
Sbjct: 1   MALTDAKIRAA--KPDEKPYKLADSGNMFLLVHPNGSRYWRLRYRFLGKEKTLALGVYPD 58

Query: 63  MKLRDAIQARESRAELVELGFDP--RKSTRSANDDSIITLNDLIDYWAENHARDNIKQCD 120
           + L +A + R++  + +  G DP  +K  + +  D+  T   +   W +++ + +    +
Sbjct: 59  VSLSEAREKRDAARKQIAEGTDPCEQKRIKKSVPDTAQTFEGIARQWHKSNKKWSASHSE 118

Query: 121 ALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRH 180
            +LK   T + P +G+     L+  D +     A+ +   + +A L  R   ++ YA + 
Sbjct: 119 KILKSLETHVFPFIGSRDITALKTPDLLIPVKAAEAKEIYEIAARLQQRITAIMRYAAQS 178

Query: 181 GLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHES---NKNFLRLMLI 237
           G++ YN   ++     G  TT KR  +    +  + + +  +  +      +   +L L+
Sbjct: 179 GIISYNPAVDM----AGALTTVKRQHRPALALNRISELLGRLDAYRGQPLTRLATKLTLL 234

Query: 238 FANRSNELRLAKKADFDLEKRVWTVPEENNKV----RKKQGGAIR-RAIPPL---AEKII 289
              RS+ELR A+ ++ D +K +WT+P E   +       +G  +R   + PL   A  I+
Sbjct: 235 IFIRSSELRFARWSEIDFKKAMWTIPPERKPIDGVKYSHRGSKMRTEHLVPLSIQALDIL 294

Query: 290 MEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTN---HDMRRT 346
            +   I   H ++F   +    +PMS N        + + +  +G+    +   H  R  
Sbjct: 295 QQIHNISGEHELIFTGDHNPW-KPMSENT-------VNNALRLMGYDTKVDVCGHGFRAM 346

Query: 347 A-RNIWESMGVPYHVAETMLGHKVHTGVQSHYLGK 380
           A  ++ ES        E  + H+   GV++ Y+ K
Sbjct: 347 ACSSLIESGLWSRDAVERQMSHQERNGVRAAYIHK 381