Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., integrase arm-type DNA-binding domain-containing protein from Dyella japonica UNC79MFTsu3.2

 Score = 89.4 bits (220), Expect = 2e-22
 Identities = 94/385 (24%), Positives = 152/385 (39%), Gaps = 33/385 (8%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMK 64
           +TD  +RA   KP       +   GL + V P G   W +R    G+   + LG+YP + 
Sbjct: 2   LTDTLVRAL--KPRHKVYRKADAGGLCIEVRPTGAKKWRFRYRFAGRANMLDLGDYPRVS 59

Query: 65  LRDAIQARESRAELVELGFDPRKSTRS-------ANDDSIITLNDLIDYWAENHARDNIK 117
           L+DA + R+ +  L+  G DP ++ R        A DD   T   + + W      +   
Sbjct: 60  LQDARRERDRQKHLLARGEDPSQARRKEQLLVNVAKDD---TFEAIANEWLGQQDFEPST 116

Query: 118 QCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYA 177
              A + +F   I P +G  P + +   + + +  +A+       +  +  R  QV  YA
Sbjct: 117 ASKARM-LFDQHIFPWIGRRPVRGISPTECLALIRRAEHAGKYDIAKRIRQRIGQVCRYA 175

Query: 178 VRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLI 237
           +  G    N    LK A   V      +  D + V AL +AI     H   +  +++   
Sbjct: 176 ITTGRANVNPAESLKGAMKIVKAVHHAALTDRKEVGALLRAIQAYQGHFVTRMAMQVAPY 235

Query: 238 FANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKII---MEQFA 294
              R  ELR  +  + DL+   W +P    K+R          I PLA +++    E  +
Sbjct: 236 VFVRPGELRHMEWTELDLDGAEWRLPAGKMKMRVPH-------IVPLARQVVALLKEIQS 288

Query: 295 IWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPR--TTNHDMRRTARNIWE 352
           +      +FP + +   RPMS N        +   +  +G+ +   T H  R TA  I  
Sbjct: 289 LTGRGRYVFPSMRS-GSRPMSDNT-------INASLRRMGYTKDEATAHGFRSTASTILN 340

Query: 353 SMGVPYHVAETMLGHKVHTGVQSHY 377
            MG      E  L H    GV+  Y
Sbjct: 341 EMGWNGDWIERQLAHCEKDGVRGSY 365