Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  100 bits (250), Expect = 5e-26
 Identities = 91/379 (24%), Positives = 160/379 (42%), Gaps = 27/379 (7%)

Query: 10  LRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAI 69
           ++A   KP      +    G+ + V P G   W  +  +NGK +R+ LG YP + L++A 
Sbjct: 5   IKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYRVNGKEKRLSLGVYPNVGLKEAR 64

Query: 70  QARESRAELVELGFDPR-----KSTRSANDDSIITLNDLIDY----WAENHARDNIKQCD 120
           + R+    L+  G DP      +      D   +   + +D     WA  H     ++ +
Sbjct: 65  EKRDELRRLIAEGIDPAAQRCPQKVAPTADSFEMVAREWMDLRSPAWAPRHLSTTCQRLE 124

Query: 121 ALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRH 180
           A        I P +G  P  Q+  +D +      ++R + + +   ++   QV  YAV  
Sbjct: 125 AY-------IFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLSICSQVFRYAVAS 177

Query: 181 GLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFAN 240
             ++ +   +L+ A          +  D + V AL +AID  S     +  LR + +   
Sbjct: 178 ARIQSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFLALTFV 237

Query: 241 RSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNHT 300
           R  ELR A+  +FD+E+R+WT+P   +K++K++   +  +   LA    +   A   N  
Sbjct: 238 RPGELRAAEWNEFDMERRIWTIPA--HKMKKRREHIVPLSTQALAVLRDVRATAPRLNSP 295

Query: 301 MMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPR--TTNHDMRRTARNIWESMGVPY 358
           M+F  V    DR +S N        L   +  LG+ +   T H  R  A ++   +G   
Sbjct: 296 MVFQSVRLRSDRGLSENT-------LLVALRSLGYGQGTMTAHGFRAMASSLLNGLGYNP 348

Query: 359 HVAETMLGHKVHTGVQSHY 377
            V E  L H     +++ Y
Sbjct: 349 DVIERQLAHIEGNKIRAAY 367