Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  109 bits (272), Expect = 2e-28
 Identities = 89/358 (24%), Positives = 153/358 (42%), Gaps = 11/358 (3%)

Query: 29  GLGVRVSPKGKITWVYRANINGKMQRIKL--GEYPAMKLRDAIQARESRAELVELGFDPR 86
           GL +RV  +GK +W  R   NGK + + L  G+YP M L DA  A     + +  G DP 
Sbjct: 23  GLYIRVQTEGKASWELRYTSNGKRRFMTLEGGQYPHMSLADARAAAAILKQSISKGGDPL 82

Query: 87  KSTRSANDDSIITLNDLIDYWAENHARDNIKQCDALLKMFHTDITPTLGNYPAKQLELID 146
                   + I T++DL + W  + A+  +K  +  L+++  ++ P +G    K +  +D
Sbjct: 83  AERAKIGQEKIQTVDDLFNDWFVD-AKKRLKHSEIPLRIYTKEVQPYIGRLQIKDVTPLD 141

Query: 147 FMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSR 206
              +  K         + + +   K++ ++A + GL   N  +  K AD G     +   
Sbjct: 142 IRNIIQKVAHSNRPTTANDTLLHCKKLFTHACKLGLKDGNPASHFKPADAGGVEKSRERA 201

Query: 207 QDEQGVKALWKAIDDISIHESNKNFLR--LMLIFANRSNELRLAKKADFDLEKRVWTVPE 264
              + +K  +    D        N+L   L++    R  EL      + DL  ++W +P+
Sbjct: 202 LSVEELKQFFSVAKDNISSFGRDNYLASALLVCLGVRKGELLKLTWQEIDLNLKLWKLPQ 261

Query: 265 ENNKVRKKQGGAIRRAIPPLAEKIIMEQFA---IWPNHTMMFPP-VNTEQDRPMSANVPV 320
              K  K     +  ++    E++ +       ++PN      P V+ +      A++  
Sbjct: 262 PRTKSSKAISIPLPDSVVEWFEELQIRACGSDYVFPNRKASKKPHVSGDTLNRAVASLFG 321

Query: 321 DFGSKLADRIEELG-FPRTTNHDMRRTARNIWESMGVPYHVAETMLGHKVHTGVQSHY 377
              SK    I  +G  P  T HD RRT R++    GVP H+AE  L HK+  GV+  Y
Sbjct: 322 HDSSKTRQPINRMGEIPYFTIHDFRRTCRSLLAKQGVPSHIAERCLNHKI-KGVEGIY 378